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Service Provider National Center for Biotechnology Information (NCBI)

Services (12)

Entrez search REST Us
Views 121 Favourites 0
Categories:
Annotations: 3 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 3 Total number of annotations sourced from other registries. 0
by stian (5 months ago)
Retrieves records in the requested format from a list of one or more UIs or from user's environment

Provider: National Center for Biotechnology Information (NCBI) | Submitter / Source: stian (5 months ago)

Tags on this service:
none
Base URL: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi | 0 REST Endpoints
PASSED
PubChem Service SOAP Us
Views 71 Favourites 0
Categories:
Annotations: 119 Total number of annotations from the provider's definition / description document. 112 Total number of annotations submitted by members of the BioCatalogue. 7 Total number of annotations sourced from other registries. 0
by paul.d.dobson (6 months ago)
Interface to PubChem

Provider: National Center for Biotechnology Information (NCBI) | Submitter / Source: paul.d.dobson (6 months ago)

Tags on this service:
WSDL Location: http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl | 28 SOAP Operations
PASSED
eFetchSequence SOAP Us
Views 131 Favourites 0
Annotations: 16 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 16 Total number of annotations sourced from other registries. 0
by Franck Tanoh (3 months ago)
Retrieves sequences in requested format from a list of one or more unique identifiers.

Provider: National Center for Biotechnology Information (NCBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/efetch_seq.wsdl | 1 SOAP Operation
PASSED
eFetchGeneService SOAP Us
Views 118 Favourites 0
Categories:
Annotations: 5 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 0
by Franck Tanoh (3 months ago)
Retrieves Genes in the requested format from a list of one or more unique identifiers.

Provider: National Center for Biotechnology Information (NCBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/efetch_gene.wsdl | 1 SOAP Operation
PASSED
eFetchSnpService SOAP Us
Views 62 Favourites 0
Categories:
Annotations: 4 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 0
by Franck Tanoh (3 months ago)
Get SNPs information given SNP ID list

Provider: National Center for Biotechnology Information (NCBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
none
WSDL Location: http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/efetch_snp.wsdl | 1 SOAP Operation
PASSED
eFetchTaxonService SOAP Us
Views 40 Favourites 0
Categories:
Annotations: 4 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 0
by Franck Tanoh (3 months ago)
Get taxonomy information given taxonomy ID

Provider: National Center for Biotechnology Information (NCBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
none
WSDL Location: http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/efetch_taxon.wsdl | 1 SOAP Operation
PASSED
eFetchOmimService SOAP Us
Views 102 Favourites 0
Categories:
Annotations: 23 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 23 Total number of annotations sourced from other registries. 0
by Pieter Neerincx (9 months ago)
The EFetch services retrieve records in the requested format from several databases hosted by the NCBI.

Provider: National Center for Biotechnology Information (NCBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/efetch_omim.wsdl | 1 SOAP Operation
PASSED
eFetchJournalsService SOAP Us
Views 110 Favourites 0
Categories:
Annotations: 21 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 21 Total number of annotations sourced from other registries. 0
by Pieter Neerincx (9 months ago)
The EFetch services retrieve records in the requested format from several databases hosted by the NCBI.
by Pieter Neerincx (9 months ago)
This service retrieves information about journals. Hence it does not provide information about articles published in those journals. To retrieve the latter use the well documented eFetchPubmedService instead.
by Pieter Neerincx (9 months ago)
Note: Unfortunately this service cannot be used to retrieve records based on standardised NLM IDs or even better ISSNs. You will need to use the ESearch service to get an NCBI specific "UID" first. These UIDs can then be used to retrieve information about a journal using the eFetchJournalsService. This behaviour is poorly documented on the NCBI site: There are three examples of identifiers used to retrieve a record. Although these do work it is not clear that these identifiers are UIDs. The UIDs from the examples are not listed in the "full record" results returned for those UIDs making the confusion complete. The requirement of using ESearch first causes unnecessary overhead making this ...

Provider: National Center for Biotechnology Information (NCBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/efetch_journals.wsdl | 1 SOAP Operation
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eFetchNlmcService SOAP Us
Views 81 Favourites 0
Categories:
Annotations: 15 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 0
by Rodrigo Lopez (about 1 year ago)
EFetch: Retrieves records in the requested format from a list of one or more UIs or from user's environment. Base URL: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?
by Pieter Neerincx (9 months ago)
The EFetch services retrieve records in the requested format from several databases hosted by the NCBI.
by Pieter Neerincx (9 months ago)
Note: this service is poorly documented on the NCBI site like in there is no documentation at all. I tried searching with NLM IDs in a similar way like for the well documented eFetchPubmed and eFetchPmc services, but could not make it work... Therefore there are no example inputs nor example outputs listed here.

Provider: National Center for Biotechnology Information (NCBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/efetch_nlmc.wsdl | 1 SOAP Operation
PASSED
eFetchPubmedService SOAP Us
Views 195 Favourites 0
Categories:
Annotations: 22 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 22 Total number of annotations sourced from other registries. 0
by Pieter Neerincx (9 months ago)
The EFetch services retrieve records in the requested format from several databases hosted by the NCBI.

Provider: National Center for Biotechnology Information (NCBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/efetch_pubmed.wsdl | 1 SOAP Operation
PASSED

Hostnames (3)

eutils.ncbi.nlm.nih.gov
pmhelp08
pubchem.ncbi.nlm.nih.gov