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Service Provider DNA Data Bank of Japan (DDBJ)

Profile

Description(s):
by Franck Tanoh (9 months ago)

DNA Data Bank of Japan (DDBJ) is the sole nucleotide sequence data bank in Asia, which is officially certified to collect nucleotide sequences from researchers and to issue the internationally recognized accession number to data submitters.

Contact Info: Info
None

Services (32)

DDBJ_GIBV REST Jp
Views 34 Favourites 0
Categories:
Annotations: 3 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 3 Total number of annotations sourced from other registries. 0
by Franck Tanoh (2 months ago)
Genome Information Broker for Viruses (GIB-V) is a complete virus genome data repository. Use this service to query the GIB-V database. SOAP variant: http://www.biocatalogue.org/services/19

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (2 months ago)

Tags on this service:
none
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=GIBV | 8 REST Endpoints
PASSED
DDBJ_GTPS REST Jp
Views 47 Favourites 0
Annotations: 5 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 0
by Franck Tanoh (2 months ago)
"GTPS" is acronym of Gene Trek in Procaryote Space. Various complete genomes of eubacteria and archaea have been registered in the International Nucleotide Sequence Databases (INSD) of DDBJ/EMBL/GenBank. The annotation and sequence data are available from GIB (Genome Information Broker; http://gib.genes.nig.ac.jp/).

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (2 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=GTPS | 8 REST Endpoints
PASSED
DDBJ_GTOP REST Jp
Views 67 Favourites 0
Annotations: 4 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
GTOP is a database built by the Laboratory of Gene-product Informatics at the National Institute of Genetics consisting of data analyses of proteins identified by various genome projects. This database mainly uses sequence homology analyses and features extensive utilization of information on three-dimensional structures. SOAP variant: http://www.biocatalogue.org/services/17

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
none
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=Gtop | 3 REST Endpoints
PASSED
DDBJ_GIB REST Jp
Views 59 Favourites 0
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
GIB (Genome Information Broker) is the comprehensive data repository of complete microbial genomes in the public domain. The service allows you to retrieve data (accession, organism, CDS etc) from GIB. SOAP variant: http://www.biocatalogue.org/services/16

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=Gib | 11 REST Endpoints
PASSED
DDBJ_BLAST REST Jp
Views 79 Favourites 0
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
Finds regions of similarity between biological sequences by executing BLAST with program, database, a query sequence and options. SOAP variant: http://www.biocatalogue.org/services/8

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=Blast | 2 REST Endpoints
PASSED
DDBJ_ARSA REST Jp
Views 50 Favourites 0
Categories:
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
Keyword search system against over 20 life sciences databases developed by DDBJ. SOAP variant: http://www.biocatalogue.org/services/12

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=ARSA | 3 REST Endpoints
PASSED
DDBJ_GetEntry REST Jp
Views 109 Favourites 0
Annotations: 9 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
Provides an easy way to retrieve entries from various databases at DDBJ. SOAP variant: http://www.biocatalogue.org/services/10

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=GetEntry | 44 REST Endpoints
PASSED
DDBJ_ddbj REST Jp
Views 408 Favourites 0
Annotations: 11 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 11 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
Retrieve DDBJ entry The DNA Data Bank of Japan (DDBJ) is one of three summit databanks that construct DDBJ/EMBL/GenBank International Nucleotide Sequence Database, through close collaboration with EBI in Europe and NCBI in USA. SOAP variant: http://www.biocatalogue.org/services/9

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=DDBJ | 7 REST Endpoints
PASSED
PML SOAP Jp
Views 43 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

Mapping SOAP Jp
Views 41 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

Hostnames (1)

xml.nig.ac.jp