Created at date Descending 1 10 170 1695 1695 Service - graphtools graphtools Graphtools webservice. Contact: Karoline Faust (kfaust@ulb.ac.be) SOAP All tests were successful for this service 2010-07-30T06:15:37Z 2010-07-16T12:46:30Z Service - FlyBase Chado XML Web Service FlyBase Chado XML Web Service This service provides access to Chado XML for all data objects that exist in the FlyBase database. Chado XML (http://gmod.org/wiki/Chado_XML) is an XML representation of data from a Chado (http://gmod.org/wiki/Chado) database. Using this service you can fetch anything that has been assigned FBxx ID including genes, alleles, insertions, transcripts, proteins, publications, etc... The FlyBase Chado XML web service can fetch objects via either primary ID or symbol. It does not fetch objects using secondary IDs or synonyms. If your list contains secondary IDs or synonyms we suggest that you first run your list through our ID Converter tool (http://flybase.org/static_pages/downloads/IDConv.html). To fetch data using a primary ID please use the following URL construct: http://flybase.org/chadoxml/id/{FlyBase ID} e.g. http://flybase.org/chadoxml/id/FBgn0001325 To fetch data using a symbol please use the following URL: http://flybase.org/chadoxml/symbol/{symbol} e.g. http://flybase.org/chadoxml/symbol/dro5-PA Please note that FlyBase publications are only retrievable via their primary ID (FBrf#). REST All tests were successful for this service 2010-07-30T06:15:33Z 2010-07-12T15:44:37Z Service - The Ontological Discovery Environment The Ontological Discovery Environment The Ontological Discovery Environment allows users to integrate gene-centered data sets across species, tissue and experimental platform. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users. Multiple online analysis tools allow data sets to be compared in real-time using combinatorial tools to discover empirical relations between diverse input sources. (analysis tools and other webservice endpoints will be coming shortly) REST All tests were successful for this service 2010-07-30T06:15:37Z 2010-07-11T19:41:10Z Service - citedin citedin Citedin finds where you are cited! Some of your papers may have been mentioned where you didn't expect that to happen: in blogs, databases, Wikipedia. Citedin finds them all. Through this website you can track various resources citing a PubMed Identifier REST All tests were successful for this service 2010-07-30T06:15:33Z 2010-07-05T10:33:05Z Service - BridgeRest BridgeRest Identifier mapping service for genes and proteins from multiple species, and for metabolites. Can translate single identifiers, batches of identifiers, look up common names and do a free text search. See also http://www.biomedcentral.com/1471-2105/11/5 REST All tests were successful for this service 2010-07-30T06:15:30Z 2010-07-05T08:45:48Z Service - DDBJ_GIBV DDBJ_GIBV Genome Information Broker for Viruses (GIB-V) is a complete virus genome data repository. Use this service to query the GIB-V database. SOAP variant: http://www.biocatalogue.org/services/19 REST All tests were successful for this service 2010-07-30T06:15:29Z 2010-07-01T14:03:05Z Service - DNA / RNA Purification DNA / RNA Purification GeneOn provides services and products for Molecular Biology REST All tests were successful for this service 2010-07-30T06:15:28Z 2010-06-25T17:22:05Z Service - Hierarchy Web services Hierarchy Web services REST Web service to get parents, children or siblings of an ontology term from a BioPortal ontology. REST No tests have been run yet for this service 2010-06-16T22:35:11Z Service - DDBJ_GTPS DDBJ_GTPS "GTPS" is acronym of Gene Trek in Procaryote Space. Various complete genomes of eubacteria and archaea have been registered in the International Nucleotide Sequence Databases (INSD) of DDBJ/EMBL/GenBank. The annotation and sequence data are available from GIB (Genome Information Broker; http://gib.genes.nig.ac.jp/). REST All tests were successful for this service 2010-07-30T06:15:28Z 2010-06-10T15:49:55Z Service - InterProScan InterProScan InterProScan usage: iprscan [-appl <name> ...] [-nocrc] [-seqtype p|n] [-trlen <N>] [-trtable <table>] [-iprlookup] [-goterms] -i <seqfile> [-o <output file>] -i <seqfile> Your sequence file (mandatory). -o <output file> The output file where to write results -appl <name> Application(s) to run (optional, use '+' as separator for multiple applications), default is all. Possible values (dependent on set-up): blastprodom fprintscan hamap hmmpfam hmmpir hmmpanther hmmtigr hmmsmart superfamily gene3d patternscan profilescan seg coils -nocrc Don't perform CRC64 check, default is on. -seqtype <type> Sequence type: n for DNA/RNA, p for protein (default). -trlen <n> Transcript length threshold (20-150). -trtable <table> Codon table number. -goterms Show GO terms if iprlookup option is also given. -iprlookup Switch on the InterPro lookup for results. -format <format> Output results format (raw, txt, html, xml(default), ebixml(EBI header on top of xml), gff) -verbose Print messages during run SOAP All tests were successful for this service 2010-07-30T06:15:27Z 2010-06-07T12:53:10Z