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Cog_error Archived / Deprecated

This service has been archived because it may not be active anymore (or is close to being non active). Please do not use it as it may not be accessible.

Specified Name (from WSDL): WSFastaService |
aka glsearch aka ggsearch aka ssearch aka fasts aka fastf aka tfasty aka tfastx aka fasty aka fastx aka fasta Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
UNCHECKED
Annotations: 94 Total number of annotations from the provider's definition / description document. 43 Total number of annotations submitted by members of the BioCatalogue. 43 Total number of annotations sourced from other registries. 8

Overview

Provider:
European Bioinformatics Institute (EBI)

Location:
United Kingdom Gb

Submitter / Source:
EMBL-EBI SupportGb (over 4 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/es/ws-servers/WSFasta

WSDL Location:
http://www.ebi.ac.uk/Tools/webservices/wsdl/WSFasta.wsdl (download last cached WSDL file)

Description(s):
from provider's description doc (over 2 years ago)

WSFasta: FASTA sequence similarity searches (see http://www.ebi.ac.uk/Tools/webservices/services/fasta).

Note: this RPC/encoded SOAP service was decommissioned on Monday 28th March 2011, see http://www.ebi.ac.uk/Tools/webservices/services/fasta for details of alternative REST and document/literal SOAP services.

by Rodrigo Lopez (over 4 years ago)

FASTA (pronounced FAST-Aye) stands for FAST-All, reflecting the fact that it can be used for a fast protein comparison or a fast nucleotide comparison. This program achieves a high level of sensitivity for similarity searching at high speed. This is achie

by Hamish McWilliam (over 2 years ago)

Sequence similarity search using the FASTA suite:


  • FASTA - protein vs. protein database and nucleotide vs. nucleotide database

  • FASTX - nucleotide vs. protein database

  • FASTY - nucleotide vs. protein database

  • GGSEAR

by Hamish McWilliam (over 2 years ago)

The WSFasta RPC/encoded SOAP service is deprecated, and due to be retired in 2011.

Please use the following services instead:
FASTA (REST) <http: />
FASTA (SOAP) <http: />
FASTM (RE

License(s): Info
by Hamish McWilliam (over 2 years ago)
Cost: Info
by Hamish McWilliam (over 2 years ago)

Free.

Usage Conditions: Info
by Hamish McWilliam (over 2 years ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Informa

Publications: Info
by EMBL-EBI Support (over 2 years ago)

McWilliam H., Valentin F., Goujon M., Li W., Narayanasamy M., Martin J., Miyar T. and Lopez R. (2009)
"Web services at the European Bioinformatics Institute - 2009"
Nucleic Acids Res. 37:W6-W10
PMID: 19435877 (http://www.ebi.ac.uk/citexplore/citationDetai

Citations: Info
None

Info Members Responsible for this Service (1)

Info Favourited By (0)

No one

Info Similar Services (100)

SOAP Operations (12)

These are the SOAP operations available for the SOAP variant of this service. Click on each one to get more information and to annotate.

checkStatus

1 input | 1 output

Part of Service: WSFasta

Get the status of a submited job (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#checkstatus_jobid)
Tags on this SOAP Operation:
none

doFasta

2 inputs | 1 output

Part of Service: WSFasta

Deprecated (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#doFasta_params_content)
Tags on this SOAP Operation:
none

getDatabases

0 inputs | 1 output

Part of Service: WSFasta

Get the list of available databases (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getdatabases)
Tags on this SOAP Operation:
none

getFilters

0 inputs | 1 output

Part of Service: WSFasta

Get the list of available input sequence filtering methods (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getfilters)
Tags on this SOAP Operation:
none

getIds

1 input | 1 output

Part of Service: WSFasta

Get the hit identifiers from the analysis result (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getids_jobid)
Tags on this SOAP Operation:
none

getMatrices

0 inputs | 1 output

Part of Service: WSFasta

Get the list of available scoring matrices (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getmatrices)
Tags on this SOAP Operation:
none

getPrograms

0 inputs | 1 output

Part of Service: WSFasta

Get the list of available analysis programs (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getprograms)
Tags on this SOAP Operation:
none

getResults

1 input | 1 output

Part of Service: WSFasta

Get the available result types for a completed job (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getresults_jobid)
Tags on this SOAP Operation:
none

getStats

0 inputs | 1 output

Part of Service: WSFasta

Get the list of available statistical methods (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getstats)
Tags on this SOAP Operation:
none

poll

2 inputs | 1 output

Part of Service: WSFasta

Get the results of a job (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#poll_jobid_type)
Tags on this SOAP Operation:
none

polljob

2 inputs | 1 output

Part of Service: WSFasta

Deprecated (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#polljob_jobid_outformat)
Tags on this SOAP Operation:
none

runFasta

2 inputs | 1 output

Part of Service: WSFasta

Submit a FASTA analysis job (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#runfasta_params_content)
Tags on this SOAP Operation:
none

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Archived Operations (0) Info


Examples

Monitoring

History

 

Info Updates from WSDL

WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSFasta.wsdl

Expand Over 2 years ago 1 update
Expand Over 2 years ago 1 update
Expand Over 3 years ago 15 updates