EMBOSS fdollop SOAP Soaplab

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Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom

Submitter/Source:
SoapLab Support (over 11 years ago)

Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/phylogeny_discrete_characters.fdollop

WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/phylogeny_discrete_characters.fdollop?wsdl(download last cached WSDL file)

Documentation URL(s): SoapLab Support (over 10 years ago) http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/fdollop.html Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Dollo and polymorphism parsimony algorithm

SoapLab Support(over 10 years ago)

Dollo and polymorphism parsimony algorithm

Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)

  • ds_lsr_analysis :
    • analysis :
      • name : fdollop
      • installation : Soaplab2 default installation
      • type : Phylogeny Discrete characters
      • output :
      • description : Dollo and polymorphism parsimony algorithm
      • version : 6.1.0
      • analysis_extension :
      • input :

Show all

  • ds_lsr_analysis :
    • analysis :
      • name : fdollop
      • installation : Soaplab2 default installation
      • type : Phylogeny Discrete characters
      • output :
      • description : Dollo and polymorphism parsimony algorithm
      • version : 6.1.0
      • analysis_extension :
        • option :
          • name : emboss
          • type : normal
          • value : true
          • name : installation
          • type : normal
          • value : Soaplab2 default installation
          • name : version
          • type : normal
          • value : 6.1.0
        • event :
          • action :
          • id : _E_1
        • app_info :
          • category : phylogeny_discrete_characters
          • help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/fdollop.html
        • parameter :
          • data :
            • ioformat : unspecified
            • iotype : input
            • repeatable :
          • base :
          • data :
            • ioformat : unspecified
            • iotype : input
            • repeatable :
          • base :
          • data :
            • result :
            • iotype : output
          • base :
          • data :
            • ioformat : unspecified
            • iotype : input
            • repeatable :
          • base :
          • data :
            • ioformat : unspecified
            • iotype : input
            • repeatable :
          • base :
          • standard :
            • list :
              • name : Method
              • list_item :
                • level : 0
                • shown_as : Dollo
                • value : d
                • level : 0
                • shown_as : Polymorphism
                • value : p
              • type : full
            • repeatable :
          • base :
          • range :
            • format : %d
            • min : 0
            • repeatable :
          • base :
            • name : njumble
            • default : 0
            • mandatory : false
            • qualifier : njumble
            • prompt : Number of times to randomise
            • type : long
            • ordering : 9
          • range :
            • format : %d
            • max : 32767
            • min : 1
            • repeatable :
          • base :
            • name : seed
            • default : 1
            • option :
              • name : scalemax
              • type : style
              • value : 32767
              • name : scalemin
              • type : style
              • value : 1
            • mandatory : false
            • qualifier : seed
            • prompt : Random number seed between 1 and 32767 (must be odd)
            • type : long
            • ordering : 10
          • range :
            • format : %f
            • min : 0
            • repeatable :
          • base :
            • name : threshold
            • option :
              • name : calculated_default
              • type : normal
              • value : ${infile.discretesize}
            • mandatory : false
            • qualifier : threshold
            • prompt : Threshold value
            • type : float
            • ordering : 11
          • base :
            • name : trout
            • default : false
            • mandatory : false
            • qualifier : trout
            • prompt : Write out trees to tree file
            • type : boolean
            • ordering : 15
          • data :
            • result :
            • extension : treefile
            • iotype : output
          • base :
          • base :
            • name : printdata
            • default : false
            • mandatory : false
            • qualifier : printdata
            • prompt : Print data at start of run
            • type : boolean
            • ordering : 17
          • base :
            • name : progress
            • default : false
            • mandatory : false
            • qualifier : progress
            • prompt : Print indications of progress of run
            • type : boolean
            • ordering : 18
          • base :
            • name : treeprint
            • default : false
            • mandatory : false
            • qualifier : treeprint
            • prompt : Print out tree
            • type : boolean
            • ordering : 19
          • base :
            • name : ancseq
            • default : false
            • mandatory : false
            • qualifier : ancseq
            • prompt : Print states at all nodes of tree
            • type : boolean
            • ordering : 20
          • base :
            • name : stepbox
            • default : false
            • mandatory : false
            • qualifier : stepbox
            • prompt : Print out steps in each character
            • type : boolean
            • ordering : 21
      • input :
        • name : njumble
        • default : 0
        • mandatory : false
        • type : long
        • name : seed
        • default : 1
        • mandatory : false
        • type : long
        • name : trout
        • default : false
        • mandatory : false
        • type : boolean
        • name : printdata
        • default : false
        • mandatory : false
        • type : boolean
        • name : progress
        • default : false
        • mandatory : false
        • type : boolean
        • name : treeprint
        • default : false
        • mandatory : false
        • type : boolean
        • name : ancseq
        • default : false
        • mandatory : false
        • type : boolean
        • name : stepbox
        • default : false
        • mandatory : false
        • type : boolean

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