jerzyo (over 3 years ago)
1819
1
GenesilicoMetaServerSOAPService
SOAP 
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Annotations: 115
10
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105
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Overview
Provider:
GeneSilico
Location:
Warsaw, Poland
Submitter / Source:
jerzyo
(over 3 years ago)
Base URL:
http://www.genesilico.pl/soap/MetaServer/service/
WSDL Location:
http://www.genesilico.pl/soap/MetaServer/service.wsdl (download last cached WSDL file)
Description(s):
by jerzyo (over 3 years ago)
jerzyo (over 3 years ago) Geneslico SOAP service for protein sequence analysis, which involve
- secondary structure prediction
- domain prediction
- disorder prediction
- dna and rna binding sites prediction
- transmembrane helices prediction
Exposed operations are part of G
Publications:
by jerzyo (over 3 years ago)
jerzyo (over 3 years ago) Kurowski MA, Bujnicki JM
GeneSilico protein structure prediction meta-server
Nucleic Acids Res 2003 Jul 1;31(13):3305-7.
ftp://ftp.genesilico.pl/iamb/papers/2003.NAR.GeneSilico.pdf
Members Responsible for this Service (1)
Favourited By (1)
SOAP Operations (10)
These are the SOAP operations available for the SOAP variant of this service.
Click on each one to get more information and to annotate.
Quick Browse
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bindndna
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bindnrna
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disembl
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iupredl
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iupreds
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pdisorder
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poodlel
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rnabindr
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say_hello
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topcons
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1 input | 1 output
Part of Service: GenesilicoMetaServerSOAPService
Method for predicting residues binding dna.
Residues marked with "+" are predicted to interact with DNA.
"?" means that method cannot reliably assess given residue
Original paper:
Wang L, Brown SJ. BindN: a web-based tool for efficient prediction of
| Tags on this SOAP Operation: |
none
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1 input | 1 output
Part of Service: GenesilicoMetaServerSOAPService
Method for predicting residues binding rna.
Residues marked with "+" are predicted to interact with DNA.
"?" means that method cannot reliably assess given residue
Original paper:
Wang L, Brown SJ. BindN: a web-based tool for efficient prediction of
| Tags on this SOAP Operation: |
none
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1 input | 1 output
Part of Service: GenesilicoMetaServerSOAPService
Method for predictiing disordered regions.
Residues marked with "D" are predicted to be disordered.
Primary citation:
Linding R, Jensen L, Diella F, Bork P, Gibson T, Russell R. Protein disorder prediction: implications for structural proteomics. Str
| Tags on this SOAP Operation: |
none
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1 input | 1 output
Part of Service: GenesilicoMetaServerSOAPService
Method for predicting disordered regions.
Optimized for long disorder regions
Residues marked with "D" are predicted to be disordered.
Primary citation:
Dosztányi Z, Csizmók V, Tompa P, Simon I. IUPred: web server for the prediction of intrinsically
| Tags on this SOAP Operation: |
none
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1 input | 1 output
Part of Service: GenesilicoMetaServerSOAPService
Predicts disordered regions giving a protein sequence
| Tags on this SOAP Operation: |
none
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1 input | 1 output
Part of Service: GenesilicoMetaServerSOAPService
Method for predicting disordered regions.
Residues marked with "D" are predicted to be disordered.
Primary website:
http://linux1.softberry.com/berry.phtml?topic=pdisorder&group=programs&subgroup=propt
| Tags on this SOAP Operation: |
none
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1 input | 1 output
Part of Service: GenesilicoMetaServerSOAPService
Method for predicting disordered regions. Optimized for long disorder regions Residues marked with "D" are predicted to be disordered.
Primary citation:
Hirose S, Shimizu K, Kanai S, Kuroda Y, Noguchi T. POODLE-L: a two-level SVM prediction system fo
| Tags on this SOAP Operation: |
none
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1 input | 1 output
Part of Service: GenesilicoMetaServerSOAPService
Method for predicting residues binding rna.
Residues marked with "+" are predicted to interact with DNA.
"?" means that method cannot reliably assess given residue
Original paper:
Terribilini M, Sander JD, Lee JH, Zaback P, Jernigan RL, Honavar V, D
| Tags on this SOAP Operation: |
none
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1 input | 1 output
Part of Service: GenesilicoMetaServerSOAPService
this operation is for testing only
| Tags on this SOAP Operation: |
none
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1 input | 1 output
Part of Service: GenesilicoMetaServerSOAPService
Predction of transmembrane helices and membrane topology.
Primary website:
http://topcons.net/
| Tags on this SOAP Operation: |
none
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