PSI-BLAST SOAP

Provider:
European Bioinformatics Institute (EBI)

Location:
United Kingdom

Submitter / Source:
Hamish McWilliam (9 months ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/psiblast

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/psiblast?wsdl(download last cached WSDL file)

Documentation URL(s): Hamish McWilliam (9 months ago)http://www.ebi.ac.uk/Tools/webservices/services/sss/psiblast_soap

Login to add a documentation URL Description(s): Hamish McWilliam (9 months ago)Position Specific Iterative BLAST (PSI-BLAST) refers to a feature of NCBI BLAST 2.0 in which a position-specific scoring matrix (PSSM) profile is constructed from set of BLAST alignments. The PSSM is then used to search the database in subsequent iterations allowing the detection of distant evolutionary relationships.

Login to add a description License(s): Hamish McWilliam (2 months ago)EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Login to add license info Cost: Hamish McWilliam (2 months ago)Free.

Login to add cost info Usage Conditions: Hamish McWilliam (2 months ago)E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html.

Login to add usage conditions info Contact Info: Hamish McWilliam (2 months ago)EMBL-EBI Support: http://www.ebi.ac.uk/support/index.php?query=WebServices

Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. Hamish McWilliam (2 months ago)Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
“A new bioinformatics analysis tools framework at EMBL-EBI.”
Nucleic Acids Res. 38:W695-9
PMID: 20439314 <http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource;=MED>
DOI: 10.1093/nar/gkq313 <http://dx.doi.org/10.1093/nar/gkq313>

Hamish McWilliam (2 months ago)Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W. and Lipman D.J. (1997)
“Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.”
Nucleic Acids Res. 25(17):3389-402.
PMID: 9254694 <http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=9254694&dataSource;=MED>
DOI: 10.1093/nar/25.17.3389 <http://dx.doi.org/10.1093/nar/25.17.3389>

Login to add publication info Citations: None Login to add a citation