pepnetService SOAP Soaplab

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Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom

Submitter/Source:
SoapLab Support (over 11 years ago)

Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/protein_2d_structure.pepnet

WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepnet?wsdl(download last cached WSDL file)

Documentation URL(s): None Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Draw a helical net for a protein sequence

Franck Tanoh(over 11 years ago)

This is a method of displaying the residues of a protein in a simple 3,4,3,4 repeating pattern that emulates at a simple level the arrangement of residues around an alpha helix. It is therefore easy to see patterns of amphipathicity that you may wish to

Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)

  • ds_lsr_analysis :
    • analysis :
      • name : pepnet
      • installation : Soaplab2 default installation
      • type : Display, Protein 2D Structure
      • output :
      • description : Draw a helical net for a protein sequence
      • version : 6.1.0
      • analysis_extension :
      • input :

Show all

  • ds_lsr_analysis :
    • analysis :
      • name : pepnet
      • installation : Soaplab2 default installation
      • type : Display, Protein 2D Structure
      • output :
      • description : Draw a helical net for a protein sequence
      • version : 6.1.0
      • analysis_extension :
        • option :
          • name : emboss
          • type : normal
          • value : true
          • name : installation
          • type : normal
          • value : Soaplab2 default installation
          • name : version
          • type : normal
          • value : 6.1.0
        • event :
          • action :
          • id : _E_1
        • app_info :
          • category : display
          • help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/pepnet.html
        • parameter :
          • data :
            • list :
              • list_item :
                • level : 0
                • value : gcg
                • level : 0
                • value : gcg8
                • level : 0
                • value : embl
                • level : 0
                • value : swiss
                • level : 0
                • value : fasta
                • level : 0
                • value : ncbi
                • level : 0
                • value : genbank
                • level : 0
                • value : nbrf
                • level : 0
                • value : pir
                • level : 0
                • value : codata
                • level : 0
                • value : strider
                • level : 0
                • value : clustal
                • level : 0
                • value : phylip
                • level : 0
                • value : acedb
                • level : 0
                • value : msf
                • level : 0
                • value : jackknifer
                • level : 0
                • value : jackknifernon
                • level : 0
                • value : nexus
                • level : 0
                • value : nexusnon
                • level : 0
                • value : treecon
                • level : 0
                • value : mega
                • level : 0
                • value : meganon
                • level : 0
                • value : ig
                • level : 0
                • value : staden
                • level : 0
                • value : text
                • level : 0
                • value : raw
              • type : full
          • base :
          • standard :
            • list :
              • list_item :
                • level : 0
                • shown_as : Portable Network Graphics (png)
                • value : png
                • level : 0
                • shown_as : Postscript
                • value : colourps
              • type : full
            • repeatable :
          • base :
          • base :
            • name : amphipathic
            • help : If this is true then the residues ACFGILMVWY are marked as squares and all other residues are unmarked. This overrides any other markup that you may have specified using the qualifiers ‘-squares’, ‘-diamonds’ and ‘-octags’.
            • default : false
            • mandatory : false
            • qualifier : amphipathic
            • prompt : Prompt for amphipathic residue marking
            • type : boolean
            • ordering : 4
          • standard :
            • repeatable :
          • base :
          • standard :
            • repeatable :
          • base :
          • standard :
            • repeatable :
          • base :
          • data :
            • result :
            • iotype : output
          • base :
          • data :
            • result :
            • iotype : output
          • base :
            • name : Graphics_in_PNG
            • option :
              • name : allow_non_existent
              • type : normal
              • value : true
              • name : datatype
              • type : normal
              • value : bindata
              • name : mimetype
              • type : normal
              • value : image/png
              • name : nodisplay
              • type : style
              • value : true
            • mandatory : false
            • qualifier : Graphics_in_PNG
            • type : byte[][]
            • method : %%%Graphics_in_PNG%%% ${Graphics_in_PNG}
            • ordering : 8
      • input :
        • name : amphipathic
        • default : false
        • mandatory : false
        • type : boolean

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