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Views 59 Favourites 0 Web Service DDBJ_GIB REST Jp

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Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0

Overview

Provider:
DNA Data Bank of Japan (DDBJ)

Location:
JAPAN Jp

Submitter / Source:
Franck TanohGb (4 months ago)

Base URL:
http://xml.nig.ac.jp/rest/Invoke?service=Gib

Description(s):
by Franck Tanoh (4 months ago)

GIB (Genome Information Broker) is the comprehensive data repository of complete microbial genomes in the public domain. The service allows you to retrieve data (accession, organism, CDS etc) from GIB.
SOAP variant: http://www.biocatalogue.org/services/16

License(s): Info
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Usage Conditions: Info
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Contact Info: Info
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Publications: Info
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Citations: Info
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REST Endpoints (11)

Quick Browse | getAccession | getCDS | getChIDFromOrganismName | getChIDList | getDivision | getFastaFile | getFlatFile | getOrganismList | getOrganismNameFromChid | getPieceNumber | getType |

getAccession | GET /?method=getAccession

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession&chid={chid}

by Franck Tanoh (4 months ago)
Get accession number from chromosome ID.
Tags on this endpoint:

getCDS | GET /?method=getCDS

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession&chid={chid}

by Franck Tanoh (4 months ago)
Get CDS features of a chromosome ID.
Tags on this endpoint:

getChIDFromOrganismName | GET /?method=getChIDFromOrganismName

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession&orgName={orgName}

by Franck Tanoh (4 months ago)
Get chromosome ID of a organism name
Tags on this endpoint:

getChIDList | GET /?method=getChIDList

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession

by Franck Tanoh (4 months ago)
Get organism and chromosome ID list registered in GIB database.
Tags on this endpoint:

getDivision | GET /?method=getDivision

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession&chid={chid}

by Franck Tanoh (4 months ago)
Get a division from chromosome ID
Tags on this endpoint:
none

getFastaFile | GET /?method=getFastaFile

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession&chid={chid}&type={type}

by Franck Tanoh (4 months ago)
Get a sequence with FASTA format from chromosome ID
Tags on this endpoint:

getFlatFile | GET /?method=getFlatFile

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession&chid={chid}

by Franck Tanoh (4 months ago)
Get a flat file from a chromosome ID.
Tags on this endpoint:
none

getOrganismList | GET /?method=getOrganismList

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession

by Franck Tanoh (4 months ago)
Get the organism name list registered in GIB database.
Tags on this endpoint:

getOrganismNameFromChid | GET /?method=getOrganismNameFromChid

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession&chid={chid}

by Franck Tanoh (4 months ago)
Get a organism name from chromosome ID.
Tags on this endpoint:

getPieceNumber | GET /?method=getPieceNumber

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession&chid={chid}

by Franck Tanoh (4 months ago)
Get the accession numbers list of piece entry from a chromosome ID.
Tags on this endpoint:
none

getType | GET /?method=getType

Part of Service: DDBJ_GIB

Part of Endpoint Group: none

Template: Help_icon http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession&chid={chid}

by Franck Tanoh (4 months ago)
Get molecular form such as linear or circular.
Tags on this endpoint:

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Monitoring

Overall status: PASSED

Availability Checks

Endpoint : http://xml.nig.ac.jp/rest/Invoke?service=Gib

Monitored Since : Thursday May 06 , 2010

PASSED

Recent History

  • PASSED about 20 hours ago
  • PASSED 1 day ago
  • PASSED 2 days ago
  • PASSED 3 days ago
  • PASSED 4 days ago

Example Endpoint : http://xml.nig.ac.jp/rest/Invoke?service=Gib&method=getAccession&chid=Ecol_K12_MG1655%3A

Monitored Since : Wednesday May 26 , 2010

PASSED

Recent History

  • PASSED about 20 hours ago
  • PASSED 1 day ago
  • PASSED 2 days ago
  • PASSED 3 days ago
  • PASSED 4 days ago

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