1562 0 FASTM (SOAP) SOAP

http://www.ebi.ac.uk/Tools/webservices/services/sss/fastm_soap

The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching databases with a set of sequence fragments, as may be obtained from protein mass spec. or Edman protein sequencing:
* FASTF - Compares an ordered peptide mixture, as would be obtained by Edman degradation of a CNBr cleavage of a protein, against a protein database.
* FASTM - Compares an ordered set of peptides to a protein sequence database or an ordered set of oligonucleotides to a nucleotide sequence database.
* FASTS - Compares a set of short peptide fragments, as would be obtained from mass-spec. analysis of a protein, against a protein database.

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Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
"A new bioinformatics analysis tools framework at EMBL-EBI."
Nucleic Acids Res. 38:W695-9
PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED)
DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

Mackey A.J., Haystead T.A. and Pearson W.R. (2002)
"Getting more from less: algorithms for rapid protein identification with multiple short peptide sequences."
Mol. Cell Proteomics 1(2):139-47.
PMID: 12096132 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=12096132&dataSource=MED)
DOI: 10.1074/mcp.M100004-MCP200 (http://dx.doi.org/10.1074/mcp.M100004-MCP200)