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aka JDispatcher aka fastf aka fasts aka fastm Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
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Annotations: 20 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 20 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EBI)

Location:
UNITED KINGDOM Gb

Submitter / Source:
Hamish McWilliamGb (over 2 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/rest/fastm

Description(s):
by EMBL-EBI Support (6 months ago)

The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching databases with a set of sequence fragments, as may be obtained from protein mass spec. or Edman protein sequencing:
* FASTF - Compares an ordered peptide mixture, as would be obtained by Edman degradation of a CNBr cleavage of a protein, against a protein database.
* FASTM - Compares an ordered set of peptides to a protein sequence database or an ordered set of oligonucleotides to a nucleotide sequence database.
* FASTS - Compares a set of short peptide fragments, as would be obtained from mass-spec. analysis of a protein, against a protein database.

Cost: Info
by EMBL-EBI Support (6 months ago)

Free.

Usage Conditions: Info
by EMBL-EBI Support (6 months ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Publications: Info
by EMBL-EBI Support (6 months ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
"A new bioinformatics analysis tools framework at EMBL-EBI."
Nucleic Acids Res. 38:W695-9
PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED)
DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

by EMBL-EBI Support (6 months ago)

Mackey A.J., Haystead T.A. and Pearson W.R. (2002)
"Getting more from less: algorithms for rapid protein identification with multiple short peptide sequences."
Mol. Cell Proteomics 1(2):139-47.
PMID: 12096132 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=12096132&dataSource=MED)
DOI: 10.1074/mcp.M100004-MCP200 (http://dx.doi.org/10.1074/mcp.M100004-MCP200)

Citations: Info
None

Info Members Responsible for this Service (1)

Info Favourited By (0)

No one

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REST Endpoints (6)

Quick Browse | parameterdetails | parameters | result | status | resulttypes | run |

parameterdetails | GET /parameterdetails/{parameterId}

Part of Service: FASTM (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/fastm/parameterdetails/{parameterId}

by Hamish McWilliam (over 2 years ago)
Get detailed information about a parameter.
Tags on this endpoint:
none

parameters | GET /parameters

Part of Service: FASTM (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/fastm/parameters

by Hamish McWilliam (over 2 years ago)
List parameter names.
Tags on this endpoint:
none

result | GET /result/{jobId}/{resultType}

Part of Service: FASTM (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/fastm/result/{jobId}/{resultType}

by Hamish McWilliam (over 2 years ago)
Get the job result of the specified type.
Tags on this endpoint:
none

status | GET /status/{jobId}

Part of Service: FASTM (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/fastm/status/{jobId}

by Hamish McWilliam (over 2 years ago)
Get the status of a submitted job.
Tags on this endpoint:
none

resulttypes | GET /resulttypes/{jobId}

Part of Service: FASTM (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/fastm/resulttypes/{jobId}

by Hamish McWilliam (over 2 years ago)
Get available result types for a finished job.
Tags on this endpoint:
none

run | POST /run

Part of Service: FASTM (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/fastm/run

by Hamish McWilliam (over 2 years ago)
Submit a job with the specified parameters. Use the parameters endpoint to get a list of the available parameters and the parameterdetails endpoint to get detailed information about a parameter, including valid values and default value.
Tags on this endpoint:
none

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