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Views 1064 Favourites 0 Web Service InterProScan (REST) REST Gb

aka InterProScan aka JDispatcher Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
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Annotations: 30 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 30 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EBI)

Location:
UNITED KINGDOM Gb

Submitter / Source:
Hamish McWilliamGb (over 2 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/rest/iprscan

Description(s):
by EMBL-EBI Support (6 months ago)

InterProScan is a tool that combines different protein signature recognition methods into one resource. The number of signature databases and their associated scanning tools, as well as the further refinement procedures, increases the complexity of the problem.

Cost: Info
by EMBL-EBI Support (6 months ago)

Free.

Usage Conditions: Info
by EMBL-EBI Support (6 months ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Publications: Info
by EMBL-EBI Support (6 months ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
"A new bioinformatics analysis tools framework at EMBL-EBI."
Nucleic Acids Res. 38:W695-9
PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED)
DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

by EMBL-EBI Support (6 months ago)

Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R. and Lopez R. (2005)
"InterProScan: protein domains identifier."
Nucleic Acids Res. 33(Web Server issue):W116-20.
PMID: 15980438 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=15980438&dataSource=MED)
DOI: 10.1093/nar/gki442 (http://dx.doi.org/10.1093/nar/gki442)

Citations: Info
None

Info Members Responsible for this Service (1)

Info Favourited By (0)

No one

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REST Endpoints (6)

Quick Browse | GET /parameterdetails/{parameterId} | GET /parameters | GET /result/{jobId}/{resultType} | GET /status/{jobId} | GET /resulttypes/{jobId} | POST /run |

GET /parameterdetails/{parameterId}

Part of Service: InterProScan (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/iprscan/parameterdetails/{parameterId}

by Hamish McWilliam (over 2 years ago)
Get detailed information about a parameter.
Tags on this endpoint:
none

GET /parameters

Part of Service: InterProScan (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/iprscan/parameters

by Hamish McWilliam (over 2 years ago)
List parameter names.
Tags on this endpoint:
none

GET /result/{jobId}/{resultType}

Part of Service: InterProScan (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/iprscan/result/{jobId}/{resultType}

by Hamish McWilliam (over 2 years ago)
Get the job result of the specified type.
Tags on this endpoint:
none

GET /status/{jobId}

Part of Service: InterProScan (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/iprscan/status/{jobId}

by Hamish McWilliam (over 2 years ago)
Get the status of a submitted job.
Tags on this endpoint:
none

GET /resulttypes/{jobId}

Part of Service: InterProScan (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/iprscan/resulttypes/{jobId}

by Hamish McWilliam (over 2 years ago)
Get available result types for a finished job.
Tags on this endpoint:
none

POST /run

Part of Service: InterProScan (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/iprscan/run

by Hamish McWilliam (over 2 years ago)
Submit a job with the specified parameters. For details of the available parameters see the parameters endpoint. For details about a specific parameter, including valid values and default values see the parameterdetails endpoint.
Tags on this endpoint:
none

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