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Views 709 Favourites 0 Web Service NCBI BLAST (REST) REST Gb

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Annotations: 17 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 17 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EBI)

Location:
UNITED KINGDOM Gb

Submitter / Source:
EMBL-EBI SupportGb (about 1 year ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/rest/ncbiblast

Description(s):
by EMBL-EBI Support (about 1 year ago)

NCBI BLAST is a sequence similarity search program. The emphasis is to find regions of sequence similarity, which will yield functional and evolutionary clues about the structure and function of the query sequence. WU-BLAST and NCBI BLAST are distinctly d

License(s): Info
by EMBL-EBI Support (about 1 year ago)
Cost: Info
by EMBL-EBI Support (about 1 year ago)

Free.

Usage Conditions: Info
by EMBL-EBI Support (about 1 year ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Informa

Publications: Info
by EMBL-EBI Support (about 1 year ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
"A new bioinformatics analysis tools framework at EMBL-EBI."
Nucleic Acids Res. 38:W695-9
PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId

by EMBL-EBI Support (about 1 year ago)

Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W. and Lipman D.J. (1997)
"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs."
Nucleic Acids Res. 25(17):3389-402.
PMID: 9254694 (http://www.ebi.ac.uk/cit

Citations: Info
None

Info Members Responsible for this Service (1)

Info Favourited By (0)

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REST Endpoints (6)

Quick Browse | GET /parameterdetails/{parameterId} | GET /parameters | GET /result/{jobId}/{resultType} | GET /status/{jobId} | GET /resulttypes/{jobId} | POST /run |

GET /parameterdetails/{parameterId}

Part of Service: NCBI BLAST (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/ncbiblast/parameterdetails/{parameterId}

by EMBL-EBI Support (about 1 year ago)
Get detailed information about a parameter.
Tags on this endpoint:
none

GET /parameters

Part of Service: NCBI BLAST (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/ncbiblast/parameters

by EMBL-EBI Support (about 1 year ago)
List parameter names.
Tags on this endpoint:
none

GET /result/{jobId}/{resultType}

Part of Service: NCBI BLAST (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/ncbiblast/result/{jobId}/{resultType}

by EMBL-EBI Support (about 1 year ago)
Get the job result of the specified type.
Tags on this endpoint:
none

GET /status/{jobId}

Part of Service: NCBI BLAST (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/ncbiblast/status/{jobId}

by EMBL-EBI Support (about 1 year ago)
Get the status of a submitted job.
Tags on this endpoint:
none

GET /resulttypes/{jobId}

Part of Service: NCBI BLAST (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/ncbiblast/resulttypes/{jobId}

by EMBL-EBI Support (about 1 year ago)
Get available result types for a finished job.
Tags on this endpoint:
none

POST /run

Part of Service: NCBI BLAST (REST)

Part of Endpoint Group: none

Template: Help_icon http://www.ebi.ac.uk/Tools/services/rest/ncbiblast/run

by EMBL-EBI Support (about 1 year ago)
Submit a job with the specified parameters.
Tags on this endpoint:
none

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