EMBOSS psiphi SOAP Soaplab

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Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom

Submitter/Source:
SoapLab Support (almost 12 years ago)

Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/protein_3d_structure.psiphi

WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/protein_3d_structure.psiphi?wsdl(download last cached WSDL file)

Documentation URL(s): SoapLab Support (almost 11 years ago) http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/psiphi.html Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Calculates phi and psi torsion angles from protein coordinates

Franck Tanoh(over 11 years ago)

Calculates the psi and phi torsion angles around the alpha carbons (CA) in (a specified stretch of) a specified chain of a protein structure from the co-ordinates of the mainchain atoms in the two planes around it

SoapLab Support(almost 11 years ago)

Calculates phi and psi torsion angles from protein coordinates

Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)

  • ds_lsr_analysis :
    • analysis :
      • name : psiphi
      • installation : Soaplab2 default installation
      • type : protein 3D structure
      • output :
      • description : Calculates phi and psi torsion angles from protein coordinates
      • version : 6.1.0
      • analysis_extension :
      • input :

Show all

  • ds_lsr_analysis :
    • analysis :
      • name : psiphi
      • installation : Soaplab2 default installation
      • type : protein 3D structure
      • output :
      • description : Calculates phi and psi torsion angles from protein coordinates
      • version : 6.1.0
      • analysis_extension :
        • option :
          • name : emboss
          • type : normal
          • value : true
          • name : installation
          • type : normal
          • value : Soaplab2 default installation
          • name : version
          • type : normal
          • value : 6.1.0
        • event :
          • action :
          • id : _E_1
        • app_info :
          • category : protein_3d_structure
          • help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/psiphi.html
        • parameter :
          • data :
            • ioformat : unspecified
            • iotype : input
            • repeatable :
          • base :
          • range :
            • format : %d
            • min : 1
            • repeatable :
          • base :
            • name : chainnumber
            • default : 1
            • option :
              • name : scalemin
              • type : style
              • value : 1
            • mandatory : false
            • qualifier : chainnumber
            • prompt : Number of the chain for which torsion angles should be calculated
            • type : long
            • ordering : 4
          • range :
            • format : %d
            • min : 1
            • repeatable :
          • base :
            • name : startresiduenumber
            • default : 1
            • option :
              • name : scalemin
              • type : style
              • value : 1
            • mandatory : false
            • qualifier : startresiduenumber
            • prompt : First residue in chain for which torsion angles should be calculated
            • type : long
            • ordering : 5
          • range :
            • format : %d
            • repeatable :
          • base :
            • name : finishresiduenumber
            • default : 1
            • mandatory : false
            • qualifier : finishresiduenumber
            • prompt : Last residue in chain for which torsion angles should be calculated (1 = last residue)
            • type : long
            • ordering : 6
          • data :
            • result :
            • iotype : output
          • base :
      • input :
        • name : chainnumber
        • default : 1
        • mandatory : false
        • type : long
        • name : startresiduenumber
        • default : 1
        • mandatory : false
        • type : long
        • name : finishresiduenumber
        • default : 1
        • mandatory : false
        • type : long

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