Ashraf Memon (4 days ago)
Search terms starting for the query used for auto-complete service.
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Service Providers (127)
Submitters (91)
Registries (3)
Members (88)
Countries (27)
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Neuroscience Terms
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Autocomplete Ontology
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Annotations: 9
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by Ashraf Memon (4 days ago)
Ashraf Memon (4 days ago) |
Provider:
Neuroscience Information Framework (NIF)
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Submitter / Source:
Base URL:
http://nif-services.neuinfo.org/ontoquest/keyword |
0 REST Endpoints
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47
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List all Ontologies
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List Vocabularies
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Annotations: 10
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by Ashraf Memon (28 days ago)
Ashraf Memon (28 days ago)
This service returns the Ontologies registered on the NIF Ontoquest Server.
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Provider:
Neuroscience Information Framework (NIF)
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Submitter / Source:
Base URL:
http://nif-services.neuinfo.org/ontoquest/ontologies |
0 REST Endpoints
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Annotations: 10
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by Josh Goodman (about 1 month ago)
Josh Goodman (about 1 month ago)
This service provides access to Chado XML for all data objects that exist in the FlyBase database. Chado XML (http://gmod.org/wiki/Chado_XML) is an XML representation of data from a Chado (http://gmod.org/wiki/Chado) database. Using this service you can fetch anything that has been assigned FBxx ID including genes, alleles, insertions, transcripts, proteins, publications, etc...
The FlyBase Chado XML web service can fetch objects via either primary ID or symbol. It does not fetch objects using secondary IDs or synonyms. If your list contains secondary IDs or synonyms we suggest that you first run your list through our ID Converter tool (http://flybase.org/static_pages/downloads/ID...
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Provider:
flybase-org
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Submitter / Source:
Base URL:
http://flybase.org/chadoxml |
2 REST Endpoints
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ODE
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PhISH
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Phenome Map
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ABBA
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Annotations: 9
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by Jeremy Jay (about 1 month ago)
Jeremy Jay (about 1 month ago)
The Ontological Discovery Environment allows users to integrate gene-centered data sets across species, tissue and experimental platform. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users. Multiple online analysis tools allow data sets to be compared in real-time using combinatorial tools to discover empirical relations between diverse input sources.
(analysis tools and other webservice endpoints will be coming shortly)
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Provider:
ontologicaldiscovery-org
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Submitter / Source:
Base URL:
http://ontologicaldiscovery.org |
3 REST Endpoints
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50
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aka
BridgeDb webservice
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Annotations: 10
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by Martijn van Iersel (2 months ago)
Martijn van Iersel (2 months ago)
Identifier mapping service for genes and proteins from multiple species, and for metabolites. Can translate single identifiers, batches of identifiers, look up common names and do a free text search.
See also http://www.biomedcentral.com/1471-2105/11/5
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Provider:
BridgeDb
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Submitter / Source:
Base URL:
http://webservice.bridgedb.org |
3 REST Endpoints
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83
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aka
NCBO Hierarchy Web services
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Annotations: 5
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by Trish Whetzel (2 months ago)
Trish Whetzel (2 months ago)
REST Web service to get parents, children or siblings of an ontology term from a BioPortal ontology.
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Provider:
BioOntology
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Submitter / Source:
Base URL:
http://rest.bioontology.org/bioportal/concepts |
1 REST Endpoint
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81
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Annotations: 6
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by Franck Tanoh (3 months ago)
Franck Tanoh (3 months ago)
RESTful interface to search and retrieve data from the Protein Data Bank (PDB). The Protein Data Bank is the single worldwide repository of information about the 3D structures of large biological molecules, including proteins and nucleic acids.
website: http://www.pdb.org/pdb
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Provider:
Protein Data Bank, USA (RCSB PDB)
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Submitter / Source:
Base URL:
http://www.pdb.org/pdb/rest |
8 REST Endpoints
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147
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Annotations: 7
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by gary.bader (3 months ago)
gary.bader (3 months ago)
Pathway Commons is a collection of publicly available pathways from multiple organisms. It provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language. Access is via a web portal for browsing, query and download. Database providers can share their pathway data via a common repository and avoid duplication and reduce software development costs. Bioinformatics software developers can increase efficiency by sharing software components. Pathways include biochemical reactions, complex assembly, transport and catalysis events, and physical interactions involving proteins, DNA, RNA, small molecules and complexes.
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Provider:
Pathway Commons
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Submitter / Source:
Base URL:
http://www.pathwaycommons.org/pc/webservice.do |
0 REST Endpoints
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121
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Annotations: 3
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by stian (5 months ago)
stian (5 months ago)
Retrieves records in the requested format from a list of one or more UIs or from user's environment
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Provider:
National Center for Biotechnology Information (NCBI)
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Submitter / Source:
Base URL:
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi |
0 REST Endpoints
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161
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Annotations: 3
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3
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by nad.anwar (5 months ago)
nad.anwar (5 months ago)
Prgrammatic access to the pathway commons data. Pathway commons provides aggregated data from pathway data providers including Reactome, BioCyc and NCI-PID.
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Provider:
Pathway Commons
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Submitter / Source:
Base URL:
http://www.pathwaycommons.org/pc/ |
0 REST Endpoints
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