Franck Tanoh (4 months ago)
Finds regions of similarity between biological sequences by executing BLAST with program, database, a query sequence and options.
SOAP variant: http://www.biocatalogue.org/services/8
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Service Providers (126)
Submitters (91)
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Members (88)
Countries (27)
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by Franck Tanoh (4 months ago)
Franck Tanoh (4 months ago) |
Provider:
DNA Data Bank of Japan (DDBJ)
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Submitter / Source:
Base URL:
http://xml.nig.ac.jp/rest/Invoke?service=Blast |
2 REST Endpoints
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Annotations: 52
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Provider:
European Molecular Biology Network (EMBnet)
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Submitter / Source:
WSDL Location:
http://wsembnet.vital-it.ch/soaplab2/services/embnet.blastn?wsdl |
23 SOAP Operations
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57
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WU-BLAST (SOAP)
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tblastx
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tblastn
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blastx
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blastp
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blastn
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Annotations: 43
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by Hamish McWilliam (6 months ago)
Hamish McWilliam (6 months ago)
WU-BLAST stands for Washington University Basic Local Alignment Search Tool. The emphasis of this tool is to find regions of sequence similarity or homology quickly, with minimum loss of sensitivity. This will yield functional and evolutionary clues about the structure and function of your novel sequence. Dr Warren Gish at Washington University released this first "gapped" version of BLAST allowing for gapped alignments and statistics.
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/wublast?wsdl |
6 SOAP Operations
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aka
MEGABLAST at SIB (nucleotide query sequence(s) against a nucleotide database, for high similarity)
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Annotations: 76
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by The EMBRACE Registry (about 1 year ago)
The EMBRACE Registry (about 1 year ago)
megaBLAST finds regions of high similarity between a nucleotide query sequence and a nucleotide sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: STS, EST, HTG, refseq, repbase, ...
INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output
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Provider:
European Molecular Biology Network (EMBnet)
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Submitter / Source:
WSDL Location:
http://wsembnet.vital-it.ch/soaplab2/services/embnet.megablast?wsdl |
23 SOAP Operations
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Annotations: 16
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by maarten (6 months ago)
maarten (6 months ago)
MRS Blast is a companion service for the text based MRS service. You can use it to blast against protein sequences stored in the databanks that were indexed using MRS. The blast search is performed asynchronously.
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Provider:
Centre for Molecular and Biomolecular Informatics (CMBI)
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Submitter / Source:
WSDL Location:
http://mrs.cmbi.ru.nl/mrsws/blast/wsdl |
2 SOAP Operations
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125
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blast
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blastp
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blastn
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tblastx
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tblastn
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Annotations: 40
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by Franck Tanoh (3 months ago)
Franck Tanoh (3 months ago)
NCBI BLAST is a sequence similarity search program. The emphasis is to find regions of sequence similarity, which will yield functional and evolutionary clues about the structure and function of the query sequence.
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/ncbiblast?wsdl |
6 SOAP Operations
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ggsearch
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glsearch
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ssearch
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tfastx
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tfasty
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fastx
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fasty
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fastf
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fasts
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fastm
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Annotations: 48
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by Eric E. Nzuobontane (3 months ago)
Eric E. Nzuobontane (3 months ago)
FASTA (pronounced FAST-AYE) stands for FAST-All, reflecting the fact that it can be used for a fast protein comparison or a fast nucleotide comparison. This program achieves a high level of sensitivity for similarity searching at high speed. This is achieved by performing optimised searches for local alignments using a substitution matrix. The high speed of this program is achieved by using the observed pattern of word hits to identify potential matches before attempting the more time consuming optimised search. The trade-off between speed and sensitivity is controlled by the ktup parameter, which specifies the size of the word. Increasing the ktup decreases the number of background hits....
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/fasta?wsdl |
6 SOAP Operations
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184
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WU-BLAST
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WSWUBlast
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WUBlast
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Annotations: 93
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by Rodrigo Lopez (about 1 year ago)
Rodrigo Lopez (about 1 year ago)
WU-BLAST2 stands for Washington University Basic Local Alignment Search Tool Version 2.0. The emphasis of this tool is to find regions of sequence similarity quickly, with minimum loss of sensitivity. This will yield functional and evolutionary clues about the structure and function of your novel sequence. Dr Warren Gish at Washington University released this first "gapped" version of BLAST allowing for gapped alignments and statistics.
Contact information: http://www.ebi.ac.uk/support
by Rodrigo Lopez (about 1 year ago)
Rodrigo Lopez (about 1 year ago)
Input data for this service can be obtained from wsdbfetch (see: http://www.ebi.ac.uk/ws/services/WSDbfetch)
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/webservices/wsdl/WSWUBlast.wsdl |
19 SOAP Operations
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63
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This service has been archived because it may not be active anymore (or is close to being non active).
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59
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This service has been archived because it may not be active anymore (or is close to being non active).
