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WSDbfetch (SOAP) SOAP Gb
Views 86 Favourites 0
aka WSDbfetch
Annotations: 35 Total number of annotations from the provider's definition / description document. 25 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
WSDbfetch: entry retrieval using entry identifiers or accession numbers for various biological databases, including EMBL-Bank, InterPro, MEDLINE, Patent Proteins, PDB, RefSeq, UniParc, UniProtKB and UniRef. Note: this is an RPC/encoded SOAP interface to the WSDbfetch service, for other interfaces please see the documentation (http://www.ebi.ac.uk/Tools/webservices/services/dbfetch).

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Hamish McWilliamGb (3 months ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/ws/services/WSDbfetch?wsdl | 7 SOAP Operations
PASSED
WSDBFetchDoclitServerService SOAP Gb
Views 52 Favourites 0
aka WSDbfetch (document/literal SOAP) aka WSDbfetch (SOAP) aka WSDbfetch aka dbfetch
Annotations: 47 Total number of annotations from the provider's definition / description document. 29 Total number of annotations submitted by members of the BioCatalogue. 18 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
WSDbfetch: entry retrieval using entry identifiers or accession numbers for various biological databases, including EMBL-Bank, InterPro, MEDLINE, Patent Proteins, PDB, RefSeq, UniParc, UniProtKB and UniRef. Note: this is a document/literal wrapped SOAP interface to the WSDbfetch service, for other interfaces please see the documentation (http://www.ebi.ac.uk/Tools/webservices/services/dbfetch).
by Hamish McWilliam (3 months ago)
This is a document/literal SOAP interface to WSDbfetch, providing equivalent functionality to that in the RPC/encoded SOAP service (http://www.biocatalogue.org/services/4).

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Hamish McWilliamGb (3 months ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/ws/services/WSDbfetchDoclit?wsdl | 7 SOAP Operations
PASSED
DDBJ_GIB REST Jp
Views 59 Favourites 0
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
GIB (Genome Information Broker) is the comprehensive data repository of complete microbial genomes in the public domain. The service allows you to retrieve data (accession, organism, CDS etc) from GIB. SOAP variant: http://www.biocatalogue.org/services/16

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=Gib | 11 REST Endpoints
PASSED
DDBJ_GetEntry REST Jp
Views 110 Favourites 0
Annotations: 9 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
Provides an easy way to retrieve entries from various databases at DDBJ. SOAP variant: http://www.biocatalogue.org/services/10

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=GetEntry | 44 REST Endpoints
PASSED
DDBJ_ddbj REST Jp
Views 408 Favourites 0
Annotations: 11 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 11 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
Retrieve DDBJ entry The DNA Data Bank of Japan (DDBJ) is one of three summit databanks that construct DDBJ/EMBL/GenBank International Nucleotide Sequence Database, through close collaboration with EBI in Europe and NCBI in USA. SOAP variant: http://www.biocatalogue.org/services/9

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=DDBJ | 7 REST Endpoints
PASSED
dbfetch REST Gb
Views 67 Favourites 0
aka biofetch
Annotations: 14 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 14 Total number of annotations sourced from other registries. 0
by Hamish McWilliam (3 months ago)
Dbfetch is an acronym for "database fetch". Dbfetch provides an easy way to retrieve entries from various databases at the EBI in a consistent manner. It can be used from any browser as well as well as within a web-aware scripting tool that uses wget, lynx or similar. The dbfetch service is a partial implementation of the OBDA (http://obda.open-bio.org/) biofetch specification.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Hamish McWilliamGb (6 months ago)

Tags on this service:
Base URL: http://www.ebi.ac.uk/cgi-bin/dbfetch | 1 REST Endpoint
PASSED
logol SOAP Fr
Views 171 Favourites 0
aka LogolMatch aka LogolDesigner
Annotations: 47 Total number of annotations from the provider's definition / description document. 26 Total number of annotations submitted by members of the BioCatalogue. 21 Total number of annotations sourced from other registries. 0
by olivier.sallou (10 months ago)
Logol is a language used to describe some patterns in a DNA/RNA/Protein sequence. It focuses on biological meaning patterns to help biologists and bio-informaticians formulate some patterns and create an appropriate model. LogolMatch will then scan a sequence with this model to find the expected patterns. Oneline documentation shows how to use this language to define patterns, and how to use LogolDesigner to create some grammar models graphically.

Provider: GenOuest | Submitter / Source: olivier.sallouFr (10 months ago)

Tags on this service:
WSDL Location: http://webservices.genouest.org/typedservices/logol.wsdl | 9 SOAP Operations
PASSED
MirMaid REST
Views 196 Favourites 2
Annotations: 8 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 8 Total number of annotations sourced from other registries. 0
by Anders Jacobsen (about 1 year ago)
MirMaid is a data-oriented RESTful web service designed for microRNA research. It reorganizes and extends data from miRBase (the official miRNA sequence repository), making it easily accessible through an intuitive API.

Provider: miRMaid | Submitter / Source: Anders JacobsenDk (about 1 year ago)

Tags on this service:
Base URL: http://current.mirmaid.org/ | 0 REST Endpoints
WARNING
EB-eye SOAP Gb
Views 285 Favourites 0
aka Eb-eye aka EBI Search Engine
Annotations: 103 Total number of annotations from the provider's definition / description document. 57 Total number of annotations submitted by members of the BioCatalogue. 45 Total number of annotations sourced from other registries. 1
by Rodrigo Lopez (about 1 year ago)
The system is developed on top of the Apache Lucene project framework, which is an Open-source, high-performance, full-featured text search engine library written entirely in Java. It uses this technology to index EBI databases in various formats (e.g. flatfiles, XML dumps, OBO format, etc.) and provides very fast access to the EBI's data resources. The system allows the user to search globally across all EBI databases or individually in selected resources by using an Advance search. Additional features of the system also uses software developed by the Carrot2 Project.
by Franck Tanoh (about 1 year ago)
web interface: http://www.ebi.ac.uk/ebisearch/
by Hamish McWilliam (6 months ago)
High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases by using the cross-references stored in the data.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/ebisearch/service.ebi?wsdl | 19 SOAP Operations
PASSED
wsdbfetch REST Gb
Views 152 Favourites 0
aka WSDbfetch (REST) aka dbfetch
Annotations: 21 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 21 Total number of annotations sourced from other registries. 0
by Rodrigo Lopez (about 1 year ago)
WSDbfetch allows you to retrieve entries from various up-to-date biological databases using entry identifiers or accession numbers. This is equivalent to the CGI based dbfetch service. Like the CGI service a request can return a maximum of 200 entries.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
Base URL: http://www.ebi.ac.uk/Tools/webservices/rest/dbfetch | 0 REST Endpoints
WARNING