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citedin REST Nl
Views 60 Favourites 0
aka http://www.citedin.org
Annotations: 5 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 0
by Andra Waagmeester (2 months ago)
Citedin finds where you are cited! Some of your papers may have been mentioned where you didn't expect that to happen: in blogs, databases, Wikipedia. Citedin finds them all. Through this website you can track various resources citing a PubMed Identifier

Provider: Netherlands Bioinformatics Consortium (NBIC) | Submitter / Source: Andra Waagmeester (2 months ago)

Tags on this service:
none
Base URL: http://www.citedin.org | 0 REST Endpoints
PASSED
BridgeRest REST Us
Views 50 Favourites 0
aka BridgeDb webservice
Annotations: 10 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
by Martijn van Iersel (2 months ago)
Identifier mapping service for genes and proteins from multiple species, and for metabolites. Can translate single identifiers, batches of identifiers, look up common names and do a free text search. See also http://www.biomedcentral.com/1471-2105/11/5

Provider: BridgeDb | Submitter / Source: Martijn van IerselNl (2 months ago)

Tags on this service:
Base URL: http://webservice.bridgedb.org | 3 REST Endpoints
PASSED
DDBJ_GTPS REST Jp
Views 47 Favourites 0
Annotations: 5 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 0
by Franck Tanoh (2 months ago)
"GTPS" is acronym of Gene Trek in Procaryote Space. Various complete genomes of eubacteria and archaea have been registered in the International Nucleotide Sequence Databases (INSD) of DDBJ/EMBL/GenBank. The annotation and sequence data are available from GIB (Genome Information Broker; http://gib.genes.nig.ac.jp/).

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (2 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=GTPS | 8 REST Endpoints
PASSED
DDBJ_GTOP REST Jp
Views 67 Favourites 0
Annotations: 4 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
GTOP is a database built by the Laboratory of Gene-product Informatics at the National Institute of Genetics consisting of data analyses of proteins identified by various genome projects. This database mainly uses sequence homology analyses and features extensive utilization of information on three-dimensional structures. SOAP variant: http://www.biocatalogue.org/services/17

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
none
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=Gtop | 3 REST Endpoints
PASSED
DDBJ_GIB REST Jp
Views 59 Favourites 0
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
GIB (Genome Information Broker) is the comprehensive data repository of complete microbial genomes in the public domain. The service allows you to retrieve data (accession, organism, CDS etc) from GIB. SOAP variant: http://www.biocatalogue.org/services/16

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=Gib | 11 REST Endpoints
PASSED
DDBJ_GetEntry REST Jp
Views 109 Favourites 0
Annotations: 9 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
Provides an easy way to retrieve entries from various databases at DDBJ. SOAP variant: http://www.biocatalogue.org/services/10

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=GetEntry | 44 REST Endpoints
PASSED
DDBJ_ddbj REST Jp
Views 408 Favourites 0
Annotations: 11 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 11 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
Retrieve DDBJ entry The DNA Data Bank of Japan (DDBJ) is one of three summit databanks that construct DDBJ/EMBL/GenBank International Nucleotide Sequence Database, through close collaboration with EBI in Europe and NCBI in USA. SOAP variant: http://www.biocatalogue.org/services/9

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (4 months ago)

Tags on this service:
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=DDBJ | 7 REST Endpoints
PASSED
GeNS SOAP Pt
Views 169 Favourites 2
Categories:
Annotations: 164 Total number of annotations from the provider's definition / description document. 154 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
by Pedro Lopes (9 months ago)
The Genomic Name Server is an innovative data integration system that incorporates a large set of heterogeneous biological data under a simple yet powerful schema. GeNS also addresses the cross-database low identifier coverage issue by proposing a new methodology of data integration.

Provider: GeNS | Submitter / Source: Pedro LopesPt (9 months ago)

Tags on this service:
WSDL Location: http://bioinformatics.ua.pt/gens/WS/Service.asmx?wsdl | 48 SOAP Operations
PASSED
EB-eye SOAP Gb
Views 285 Favourites 0
aka Eb-eye aka EBI Search Engine
Annotations: 103 Total number of annotations from the provider's definition / description document. 57 Total number of annotations submitted by members of the BioCatalogue. 45 Total number of annotations sourced from other registries. 1
by Rodrigo Lopez (about 1 year ago)
The system is developed on top of the Apache Lucene project framework, which is an Open-source, high-performance, full-featured text search engine library written entirely in Java. It uses this technology to index EBI databases in various formats (e.g. flatfiles, XML dumps, OBO format, etc.) and provides very fast access to the EBI's data resources. The system allows the user to search globally across all EBI databases or individually in selected resources by using an Advance search. Additional features of the system also uses software developed by the Carrot2 Project.
by Franck Tanoh (about 1 year ago)
web interface: http://www.ebi.ac.uk/ebisearch/
by Hamish McWilliam (6 months ago)
High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases by using the cross-references stored in the data.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/ebisearch/service.ebi?wsdl | 19 SOAP Operations
PASSED
pfam REST Gb
Views 177 Favourites 1
Annotations: 13 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 13 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
This service allows you to access and retrieve data from the pfam database. The Pfam database is a large collection of protein domain families. Each family is represented by multiple sequence alignments and hidden Markov models (HMMs). To return the accession and ID for a Pfam family, given either the ID or accession as input. Any of the following URLs will return the same simple XML document: http://pfam.sanger.ac.uk/family/acc?id=Piwi&output=xml http://pfam.sanger.ac.uk/family/acc/Piwi?output=xml http://pfam.sanger.ac.uk/family/id?output=xml&acc=PF02171 http://pfam.sanger.ac.uk/family/id/Piwi?output=xml http://pfam.sanger.ac.uk/family?entry=Piwi&output=xml You can retrieve ...

Provider: Sanger Institute | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Base URL: http://pfam.sanger.ac.uk/ | 0 REST Endpoints
PASSED