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FlyBase Chado XML Web Service REST Us
Views 89 Favourites 0
Annotations: 10 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
by Josh Goodman (about 1 month ago)
This service provides access to Chado XML for all data objects that exist in the FlyBase database. Chado XML (http://gmod.org/wiki/Chado_XML) is an XML representation of data from a Chado (http://gmod.org/wiki/Chado) database. Using this service you can fetch anything that has been assigned FBxx ID including genes, alleles, insertions, transcripts, proteins, publications, etc... The FlyBase Chado XML web service can fetch objects via either primary ID or symbol. It does not fetch objects using secondary IDs or synonyms. If your list contains secondary IDs or synonyms we suggest that you first run your list through our ID Converter tool (http://flybase.org/static_pages/downloads/ID...

Provider: flybase-org | Submitter / Source: Josh GoodmanUs (about 1 month ago)

Tags on this service:
Base URL: http://flybase.org/chadoxml | 2 REST Endpoints
PASSED
citedin REST Nl
Views 60 Favourites 0
aka http://www.citedin.org
Annotations: 5 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 0
by Andra Waagmeester (2 months ago)
Citedin finds where you are cited! Some of your papers may have been mentioned where you didn't expect that to happen: in blogs, databases, Wikipedia. Citedin finds them all. Through this website you can track various resources citing a PubMed Identifier

Provider: Netherlands Bioinformatics Consortium (NBIC) | Submitter / Source: Andra Waagmeester (2 months ago)

Tags on this service:
none
Base URL: http://www.citedin.org | 0 REST Endpoints
PASSED
WSDbfetch (SOAP) SOAP Gb
Views 80 Favourites 0
aka WSDbfetch
Annotations: 35 Total number of annotations from the provider's definition / description document. 25 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
WSDbfetch: entry retrieval using entry identifiers or accession numbers for various biological databases, including EMBL-Bank, InterPro, MEDLINE, Patent Proteins, PDB, RefSeq, UniParc, UniProtKB and UniRef. Note: this is an RPC/encoded SOAP interface to the WSDbfetch service, for other interfaces please see the documentation (http://www.ebi.ac.uk/Tools/webservices/services/dbfetch).

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Hamish McWilliamGb (3 months ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/ws/services/WSDbfetch?wsdl | 7 SOAP Operations
PASSED
WSDBFetchDoclitServerService SOAP Gb
Views 52 Favourites 0
aka WSDbfetch (document/literal SOAP) aka WSDbfetch (SOAP) aka WSDbfetch aka dbfetch
Annotations: 47 Total number of annotations from the provider's definition / description document. 29 Total number of annotations submitted by members of the BioCatalogue. 18 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
WSDbfetch: entry retrieval using entry identifiers or accession numbers for various biological databases, including EMBL-Bank, InterPro, MEDLINE, Patent Proteins, PDB, RefSeq, UniParc, UniProtKB and UniRef. Note: this is a document/literal wrapped SOAP interface to the WSDbfetch service, for other interfaces please see the documentation (http://www.ebi.ac.uk/Tools/webservices/services/dbfetch).
by Hamish McWilliam (3 months ago)
This is a document/literal SOAP interface to WSDbfetch, providing equivalent functionality to that in the RPC/encoded SOAP service (http://www.biocatalogue.org/services/4).

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Hamish McWilliamGb (3 months ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/ws/services/WSDbfetchDoclit?wsdl | 7 SOAP Operations
PASSED
dbfetch REST Gb
Views 67 Favourites 0
aka biofetch
Annotations: 14 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 14 Total number of annotations sourced from other registries. 0
by Hamish McWilliam (3 months ago)
Dbfetch is an acronym for "database fetch". Dbfetch provides an easy way to retrieve entries from various databases at the EBI in a consistent manner. It can be used from any browser as well as well as within a web-aware scripting tool that uses wget, lynx or similar. The dbfetch service is a partial implementation of the OBDA (http://obda.open-bio.org/) biofetch specification.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Hamish McWilliamGb (6 months ago)

Tags on this service:
Base URL: http://www.ebi.ac.uk/cgi-bin/dbfetch | 1 REST Endpoint
PASSED
Search.HSLS.MolBio REST
Views 180 Favourites 0
aka Health Sciences Library System University Of Pittsburgh Mol Bio Search
Annotations: 7 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 7 Total number of annotations sourced from other registries. 0
by ansuman (about 1 year ago)
Search.HSLS.OBRC provides quick access to the major bioinformatics databases, software tools, and related literature on the Web. Select a resource tab. Enter a keyword, phrase, gene name, disease, biological process, etc. Click the Search button to retrieve a list of resources on a new page. See screen shot below for help navigating the results page. Click on the item of interest for access Databases/Tools provides a quick federated search of molecular databases and software tools from the HSLS Online Bioinformatics Resource Collection (OBRC) and the BioMed Central Databases collection. Articles on Databases/Tools provides a list of PubMed articles specifically on molecular dat...

Provider: University of Pittsburgh | Submitter / Source: ansumanUs (about 1 year ago)

Tags on this service:
Base URL: http://www.hsls.pitt.edu/guides/genetics | 0 REST Endpoints
PASSED
Online Bioinformatics Resources Collection REST
Views 224 Favourites 0
aka OBRC
Categories:
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by ansuman (about 1 year ago)
To the best of our knowledge, the OBRC is the largest online collection of its kind and the only one to offer unique search features and a novel search-results display. With the OBRC, users can • browse a continually updated, expert verified collection of bioinformatics databases and software tools categorized into useful topics and subtopics • identify databases and tools using an intuitive search engine that not only provides a quick overview of all search results, but also demonstrates how the search results are related to each other via organization into topical clusters • select the best bioinformatics software tools based on community-utilization as represented by citation cou...

Provider: University of Pittsburgh | Submitter / Source: ansumanUs (about 1 year ago)

Tags on this service:
Base URL: http://www.hsls.pitt.edu/guides/genetics/obrc/ | 0 REST Endpoints
PASSED
EB-eye SOAP Gb
Views 285 Favourites 0
aka Eb-eye aka EBI Search Engine
Annotations: 103 Total number of annotations from the provider's definition / description document. 57 Total number of annotations submitted by members of the BioCatalogue. 45 Total number of annotations sourced from other registries. 1
by Rodrigo Lopez (about 1 year ago)
The system is developed on top of the Apache Lucene project framework, which is an Open-source, high-performance, full-featured text search engine library written entirely in Java. It uses this technology to index EBI databases in various formats (e.g. flatfiles, XML dumps, OBO format, etc.) and provides very fast access to the EBI's data resources. The system allows the user to search globally across all EBI databases or individually in selected resources by using an Advance search. Additional features of the system also uses software developed by the Carrot2 Project.
by Franck Tanoh (about 1 year ago)
web interface: http://www.ebi.ac.uk/ebisearch/
by Hamish McWilliam (6 months ago)
High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases by using the cross-references stored in the data.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/ebisearch/service.ebi?wsdl | 19 SOAP Operations
PASSED
wsdbfetch REST Gb
Views 151 Favourites 0
aka WSDbfetch (REST) aka dbfetch
Annotations: 21 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 21 Total number of annotations sourced from other registries. 0
by Rodrigo Lopez (about 1 year ago)
WSDbfetch allows you to retrieve entries from various up-to-date biological databases using entry identifiers or accession numbers. This is equivalent to the CGI based dbfetch service. Like the CGI service a request can return a maximum of 200 entries.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
Base URL: http://www.ebi.ac.uk/Tools/webservices/rest/dbfetch | 0 REST Endpoints
WARNING
WSDBFetchServerLegacyService SOAP Gb
Views 193 Favourites 0
aka WSDbfetch Legacy (RPC/encoded SOAP) aka DBFetch
Annotations: 48 Total number of annotations from the provider's definition / description document. 29 Total number of annotations submitted by members of the BioCatalogue. 17 Total number of annotations sourced from other registries. 2
from provider's description doc (3 months ago)
WSDbfetch: entry retrieval using entry identifiers or accession numbers for various biological databases, including EMBL-Bank, InterPro, MEDLINE, Patent Proteins, PDB, RefSeq, UniParc, UniProtKB and UniRef. Note: this interface is deprecated and is only provided for compatibility with old clients, for other interfaces please see the documentation (http://www.ebi.ac.uk/Tools/webservices/services/dbfetch).
by Franck Tanoh (about 1 year ago)
The services retrieves entries (sequences, litterature abstract, protein structure information, etc) from various up-to-date biological databases using databases entry identifiers or accession numbers. Supported databases (complete list can be found on the web interface): EMBL, Ensembl, UniProt, UniRef, UniSave, RefSeq, Medline, PDB, InterPro, HGVbase, GenomeReviews, interPro. Web interface: http://www.ebi.ac.uk/cgi-bin/dbfetch

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: SeekDa (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl | 7 SOAP Operations
PASSED