Franck Tanoh (4 months ago)
Finds regions of similarity between biological sequences by executing BLAST with program, database, a query sequence and options.
SOAP variant: http://www.biocatalogue.org/services/8
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Service Providers (126)
Submitters (91)
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Annotations: 6
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by Franck Tanoh (4 months ago)
Franck Tanoh (4 months ago) |
Provider:
DNA Data Bank of Japan (DDBJ)
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Submitter / Source:
Base URL:
http://xml.nig.ac.jp/rest/Invoke?service=Blast |
2 REST Endpoints
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49
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Annotations: 56
40
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Provider:
European Molecular Biology Network (EMBnet)
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Submitter / Source:
WSDL Location:
http://wsembnet.vital-it.ch/soaplab2/services/embnet.blastp?wsdl |
23 SOAP Operations
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39
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This service has been archived because it may not be active anymore (or is close to being non active).
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35
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aka
PSI-Search
aka
WSPSISearch
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Annotations: 28
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by Hamish McWilliam (6 months ago)
Hamish McWilliam (6 months ago)
PSI-Search, similar to PSI-BLAST, combines the Smith-Waterman search algorithm with the PSI-BLAST profile construction strategy to find distantly related protein sequences. Searches are done with SSEARCH, and the selected hits are combined with BLASTPGP to build a position specific scoring matrix (PSSM), which is then used for another search with SSEARCH in the next iteration.
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/webservices/wsdl/WSPSISearch.wsdl |
4 SOAP Operations
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33
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aka
PSI-BLAST
aka
WSPSIBlast
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Annotations: 29
16
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by Hamish McWilliam (6 months ago)
Hamish McWilliam (6 months ago)
Position Specific Iterative BLAST (PSI-BLAST) is a feature of the NCBI BLAST 2 suite in which a profile is automatically constructed from the first set of BLAST alignments obtained from a search. PSI-BLAST is similar to NCBI BLAST except that it uses position-specific scoring matrices derived during the search, this tool is used to detect distant evolutionary relationships.
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/webservices/wsdl/WSPSIBlast.wsdl |
4 SOAP Operations
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57
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aka
WU-BLAST (SOAP)
aka
tblastx
aka
tblastn
aka
blastx
aka
blastp
aka
blastn
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Annotations: 43
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by Hamish McWilliam (6 months ago)
Hamish McWilliam (6 months ago)
WU-BLAST stands for Washington University Basic Local Alignment Search Tool. The emphasis of this tool is to find regions of sequence similarity or homology quickly, with minimum loss of sensitivity. This will yield functional and evolutionary clues about the structure and function of your novel sequence. Dr Warren Gish at Washington University released this first "gapped" version of BLAST allowing for gapped alignments and statistics.
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/wublast?wsdl |
6 SOAP Operations
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37
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aka
PSI-Search (SOAP)
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Annotations: 39
24
15
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by Hamish McWilliam (6 months ago)
Hamish McWilliam (6 months ago)
Similar to PSI-BLAST, PSI-Search uses SSEARCH to perform a rigorous Smith & Waterman search of a protein database. From the results, the significant hits are used to create a position-specific scoring matrix (PSSM) profile using NCBI blastpgp. The profile is then used to perform the search in subsequent iterations allowing the detection of distant evolutionary relationships.
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/psisearch?wsdl |
6 SOAP Operations
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83
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aka
PSI-BLAST (SOAP)
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Annotations: 40
24
16
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by Hamish McWilliam (6 months ago)
Hamish McWilliam (6 months ago)
Position Specific Iterative BLAST (PSI-BLAST) refers to a feature of NCBI BLAST 2.0 in which a position-specific scoring matrix (PSSM) profile is constructed from set of BLAST alignments. The PSSM is then used to search the database in subsequent iterations allowing the detection of distant evolutionary relationships.
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/psiblast?wsdl |
6 SOAP Operations
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179
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Annotations: 55
16
39
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No description(s) yet
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Provider:
GeneSilico
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Submitter / Source:
WSDL Location:
http://www.genesilico.pl/soap/ProteinSilico/service.wsdl |
16 SOAP Operations
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288
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aka
PHI-BLAST
aka
PSI-BLAST
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Annotations: 68
22
46
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by Franck Tanoh (about 1 year ago)
Franck Tanoh (about 1 year ago)
Perform a Position Specific Iterative BLAST (PSI-BLAST) and a Pattern Hit Initiated BLAST (PHI-BLAST) given a specified protein sequence.
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/webservices/wsdl/WSBlastpgp.wsdl |
5 SOAP Operations
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