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G-language REST service REST Jp
Views 10 Favourites 0
aka REST Service for G-language System
Annotations: 7 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 7 Total number of annotations sourced from other registries. 0
by cory (3 days ago)
G-language Genome Analysis Environment (G-language GAE) is a set of Perl libraries for genome sequence analysis that is compatible with BioPerl, equipped with several software interfaces (interactive Perl/UNIX shell with persistent data, AJAX Web GUI, Perl API). The software package contains more than 100 original analysis programs especially focusing on bacterial genome analysis, including those for the identification of binding sites with information theory, analysis of nucleotide composition bias, analysis of the distribution of characteristic oligonucleotides, analysis of codons and prediction of expression levels, and visualization of genomic information. Taking advantage of the BioH...

Provider: rest-g-language-org | Submitter / Source: coryJp (3 days ago)

Tags on this service:
Base URL: http://rest.g-language.org | 0 REST Endpoints
PASSED
Auto-Complete Neuroscience Terms REST Us
Views 6 Favourites 0
aka Neuroscience Terms aka Autocomplete Ontology
Annotations: 9 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 0
by Ashraf Memon (3 days ago)
Search terms starting for the query used for auto-complete service.

Provider: Neuroscience Information Framework (NIF) | Submitter / Source: Ashraf MemonUs (3 days ago)

Tags on this service:
none
Base URL: http://nif-services.neuinfo.org/ontoquest/keyword | 0 REST Endpoints
WARNING
List Ontologies REST Us
Views 47 Favourites 0
aka List all Ontologies aka List Vocabularies
Annotations: 10 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
by Ashraf Memon (27 days ago)
This service returns the Ontologies registered on the NIF Ontoquest Server.

Provider: Neuroscience Information Framework (NIF) | Submitter / Source: Ashraf MemonUs (27 days ago)

Tags on this service:
Base URL: http://nif-services.neuinfo.org/ontoquest/ontologies | 0 REST Endpoints
PASSED
FlyBase Chado XML Web Service REST Us
Views 89 Favourites 0
Annotations: 10 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
by Josh Goodman (about 1 month ago)
This service provides access to Chado XML for all data objects that exist in the FlyBase database. Chado XML (http://gmod.org/wiki/Chado_XML) is an XML representation of data from a Chado (http://gmod.org/wiki/Chado) database. Using this service you can fetch anything that has been assigned FBxx ID including genes, alleles, insertions, transcripts, proteins, publications, etc... The FlyBase Chado XML web service can fetch objects via either primary ID or symbol. It does not fetch objects using secondary IDs or synonyms. If your list contains secondary IDs or synonyms we suggest that you first run your list through our ID Converter tool (http://flybase.org/static_pages/downloads/ID...

Provider: flybase-org | Submitter / Source: Josh GoodmanUs (about 1 month ago)

Tags on this service:
Base URL: http://flybase.org/chadoxml | 2 REST Endpoints
PASSED
The Ontological Discovery Environment REST Us
Views 74 Favourites 0
aka ODE aka PhISH aka Phenome Map aka ABBA
Annotations: 9 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 0
by Jeremy Jay (about 1 month ago)
The Ontological Discovery Environment allows users to integrate gene-centered data sets across species, tissue and experimental platform. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users. Multiple online analysis tools allow data sets to be compared in real-time using combinatorial tools to discover empirical relations between diverse input sources. (analysis tools and other webservice endpoints will be coming shortly)

Provider: ontologicaldiscovery-org | Submitter / Source: Jeremy JayUs (about 1 month ago)

Tags on this service:
none
Base URL: http://ontologicaldiscovery.org | 3 REST Endpoints
PASSED
citedin REST Nl
Views 60 Favourites 0
aka http://www.citedin.org
Annotations: 5 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 0
by Andra Waagmeester (2 months ago)
Citedin finds where you are cited! Some of your papers may have been mentioned where you didn't expect that to happen: in blogs, databases, Wikipedia. Citedin finds them all. Through this website you can track various resources citing a PubMed Identifier

Provider: Netherlands Bioinformatics Consortium (NBIC) | Submitter / Source: Andra Waagmeester (2 months ago)

Tags on this service:
none
Base URL: http://www.citedin.org | 0 REST Endpoints
PASSED
BridgeRest REST Us
Views 50 Favourites 0
aka BridgeDb webservice
Annotations: 10 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
by Martijn van Iersel (2 months ago)
Identifier mapping service for genes and proteins from multiple species, and for metabolites. Can translate single identifiers, batches of identifiers, look up common names and do a free text search. See also http://www.biomedcentral.com/1471-2105/11/5

Provider: BridgeDb | Submitter / Source: Martijn van IerselNl (2 months ago)

Tags on this service:
Base URL: http://webservice.bridgedb.org | 3 REST Endpoints
PASSED
DDBJ_GIBV REST Jp
Views 34 Favourites 0
Categories:
Annotations: 3 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 3 Total number of annotations sourced from other registries. 0
by Franck Tanoh (2 months ago)
Genome Information Broker for Viruses (GIB-V) is a complete virus genome data repository. Use this service to query the GIB-V database. SOAP variant: http://www.biocatalogue.org/services/19

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (2 months ago)

Tags on this service:
none
Base URL: http://xml.nig.ac.jp/rest/Invoke?service=GIBV | 8 REST Endpoints
PASSED
DNA / RNA Purification REST
Views 52 Favourites 0
aka for Genomic and blood DNA
Annotations: 3 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 3 Total number of annotations sourced from other registries. 0
by Andreas Steinhoff (2 months ago)
GeneOn provides services and products for Molecular Biology

Provider: GeneON | Submitter / Source: Andreas SteinhoffDe (2 months ago)

Tags on this service:
none
Base URL: http://www.taq-dna.com | 0 REST Endpoints
PASSED
Hierarchy Web services REST Us
Views 83 Favourites 0
aka NCBO Hierarchy Web services
Categories:
Annotations: 5 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 0
by Trish Whetzel (2 months ago)
REST Web service to get parents, children or siblings of an ontology term from a BioPortal ontology.

Provider: BioOntology | Submitter / Source: Trish WhetzelUs (2 months ago)

Tags on this service:
Base URL: http://rest.bioontology.org/bioportal/concepts | 1 REST Endpoint
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