Rodrigo Lopez (about 1 year ago)
Sequence similarity search using NCBI Blast 2
Tag Results
Tag "blast" returned 28 services
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 164
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aka
NCBIBlast
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Annotations: 64
 26
38
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by Rodrigo Lopez (about 1 year ago)
Rodrigo Lopez (about 1 year ago)
by Franck Tanoh (12 months ago)
Franck Tanoh (12 months ago)
NCBI BLAST is a sequence similarity search program. BLAST stands for Basic Local Alignment Search Tool. The emphasis is to find regions of sequence similarity, which will yield functional and evolutionary clues about the structure and function of the query sequence. WU-BLAST ( http://www.biocatalogue.org/services/1927-wswublastservice_717643 ) and NCBI BLAST are distinctly different software packages, although they have a common lineage for some portions of their code, the two services do their work differently, obtain different results and offer different features.
web form: http://www.ebi.ac.uk/Tools/blastall/
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/webservices/wsdl/WSNCBIBlast.wsdl?kjkj |
6 SOAP Operations
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263
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Annotations: 41
27
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from
provider's description doc
(3 months ago)
provider's description doc
(3 months ago)
WS-I compatible BLAST Web Service.
0.3 (testing service, not for production)
by Franck Tanoh (2 months ago)
Franck Tanoh (2 months ago)
---
ServiceDocumentation:
Version: 0.3 (testing service, not for production)
xsi:schemaLocation: http://www.bccs.uib.no/ServiceDocumentation http://api.bioinfo.no/schema/ServiceDocumentation.xsd
xmlns:doc: http://www.bccs.uib.no/ServiceDocumentation
xmlns:xsi: http://www.w3.org/2001/XMLSchema-instance
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Provider:
Bergen Center for Computational Science
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Submitter / Source:
WSDL Location:
http://api.bioinfo.no/wsdl/Blast.wsdl |
8 SOAP Operations
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1057
1
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Annotations: 215
42
69
104
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by Franck Tanoh (about 1 year ago)
Franck Tanoh (about 1 year ago)
BLAST finds regions of similarity between biological sequences.
This service might not be executable when servers for the analysis are busy. In this case, you will receive the following message:
'The search and analysis service is very busy now. Please try it again.'
by dave (6 months ago)
dave (6 months ago)
Uses the DDBJ's UniProt BLAST service that forms part of its Web API for Bioinformatics pages.
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Provider:
DNA Data Bank of Japan (DDBJ)
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Submitter / Source:
WSDL Location:
http://xml.nig.ac.jp/wsdl/Blast.wsdl |
8 SOAP Operations
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154
1
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Annotations: 99
23
76
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by Franck Tanoh (about 1 year ago)
Franck Tanoh (about 1 year ago)
Retrieves information from the database of protein subcellular localization (DBSubLoc). This database contains proteins from primary protein database such as SWISS-PROT and PIR. By collecting the subcellular localization annotation, these information are classified and categorized by cross referencs to taxonomies and Gene Ontology database.
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Provider:
Institute of Bioinformatics, Tsinghua University
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Submitter / Source:
WSDL Location:
http://www.bioinfo.tsinghua.edu.cn/~tigerchen/SubLoc.wsdl |
7 SOAP Operations
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111
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aka
BLASTatlas
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Annotations: 26
1
16
9
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from
provider's description doc
(about 1 year ago)
provider's description doc
(about 1 year ago)
This service creates maps of genome homology of a list of sequences against a reference
genome using either blastp, blastn, tblastn, or blastx.
The resolution is per-residue or per nucleotide depending on the regime of the blast
search: For each annotation in the reference genome, the best hit in the database
genome is found using one of the above algorithms. Each matching or mismatching
residue/nucleotide of the best hit (based on BLAST score) is then mapped back to the
genome sequence, using the coordinates provided in the annotations.
In the following, 'database' refers to the sequences being searched whereas
'reference' refers to the genome ...
by pfhallin (6 months ago)
pfhallin (6 months ago)
This BLASTatlas service creates maps of genome homology of a list of sequences against a reference
genome using either blastp, blastn, tblastn, or blastx.
The resolution is per-residue or per nucleotide depending on the regime of the blast
search: For each annotation in the reference genome, the best hit in the database
genome is found using one of the above algorithms. Each matching or mismatching
residue/nucleotide of the best hit (based on BLAST score) is then mapped back to the
genome sequence, using the coordinates provided in the annotations.
In the following, 'database' refers to the sequences being searched whereas
'reference' refers to the genome on to which the search is map...
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Provider:
Center for Biological Sequence Analysis (CBS)
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Submitter / Source:
WSDL Location:
http://www.cbs.dtu.dk/ws/BLASTatlas/BLASTatlas_1_0_ws2.wsdl |
3 SOAP Operations
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105
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aka
blast
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Annotations: 22
15
7
0
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from
provider's description doc
(3 months ago)
provider's description doc
(3 months ago)
Blast @ IBCP (http://gbio-pbil.ibcp.fr)
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Provider:
Institut de Biologie et Chimie des Proteines (IBCP)
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Submitter / Source:
WSDL Location:
http://gbio-pbil.ibcp.fr/media/wsdl/BlastWS.wsdl |
4 SOAP Operations
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109
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aka
blast prodom database
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Annotations: 28
2
23
3
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from
provider's description doc
(about 1 year ago)
provider's description doc
(about 1 year ago)
Contact : Daniel Kahn, kahn@biomserv.univ-lyon1.fr
Reference : Servant F, Bru C, Carrière S, Courcelle E, Gouzy J, Peyruc D, Kahn D (2002) ProDom: Automated clustering of homologous domains. Briefings in Bioinformatics. vol 3, no 3:246-251
by Franck Tanoh (about 1 year ago)
Franck Tanoh (about 1 year ago)
Executes blast on a blast (blastn or blastp) on ProDom database (protein domain database).
ProDom database home page: http://prodom.prabi.fr/prodom/current/html/home.php
by lauranne.duquenne (6 months ago)
lauranne.duquenne (6 months ago)
blastProDom performs a blast (blastx or blastp) on the protein domain family database ProDom : enter a sequence (nucleotides or proteins, raw or fasta format) and it returns a blast output with the name of the families corresponding to the hits found, and a URL to get the image visualizing the blasted domains on the protein.
A perl script is available to run this webservice from your computer. Please install SOAP Lite before.
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Provider:
PRABI - Rhone-Alpes Bioinformatics Center
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Submitter / Source:
WSDL Location:
http://prodom.prabi.fr/prodom/current/wsdl/blastliteral.wsdl |
1 SOAP Operation
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53
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aka
psi-blast prodom database
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Annotations: 23
13
10
0
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by Franck Tanoh (about 1 year ago)
Franck Tanoh (about 1 year ago)
Performs a recursive psi-blast against the ProDom database.
ProDom database website: http://prodom.prabi.fr/prodom/current/html/home.php
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Provider:
PRABI - Rhone-Alpes Bioinformatics Center
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Submitter / Source:
WSDL Location:
http://prodom.prabi.fr/prodom/current/wsdl/blastprodom.wsdl |
2 SOAP Operations
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184
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aka
WU-BLAST
aka
WSWUBlast
aka
WUBlast
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Annotations: 93
68
25
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by Rodrigo Lopez (about 1 year ago)
Rodrigo Lopez (about 1 year ago)
WU-BLAST2 stands for Washington University Basic Local Alignment Search Tool Version 2.0. The emphasis of this tool is to find regions of sequence similarity quickly, with minimum loss of sensitivity. This will yield functional and evolutionary clues about the structure and function of your novel sequence. Dr Warren Gish at Washington University released this first "gapped" version of BLAST allowing for gapped alignments and statistics.
Contact information: http://www.ebi.ac.uk/support
by Rodrigo Lopez (about 1 year ago)
Rodrigo Lopez (about 1 year ago)
Input data for this service can be obtained from wsdbfetch (see: http://www.ebi.ac.uk/ws/services/WSDbfetch)
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Provider:
European Bioinformatics Institute (EBI)
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Submitter / Source:
WSDL Location:
http://www.ebi.ac.uk/Tools/webservices/wsdl/WSWUBlast.wsdl |
19 SOAP Operations
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72
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This service has been archived because it may not be active anymore (or is close to being non active).
