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Tag "data retrieval" returned 17 services

PromoSerSOAP SOAP Us
Views 59 Favourites 0
aka Promoter finder
Categories:
Annotations: 25 Total number of annotations from the provider's definition / description document. 15 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
A large-scale, batch service for promoter extraction
by Franck Tanoh (about 1 year ago)
Human, Mouse and Rat promoter extraction service. This service is operated using a job ticket model. Requests are submitted using 'submit_job', which returns immediately with a URL to a job ticket or an error if the inputs where incorrect. The actual result can be retrieved either in XML format or in simple FASTA format by accessing that URL. An "object not found" error indicates that the job was not found, probably because it is not ready. Please retry the request within at least 5 seconds for upto 3 minutes before giving up. The system will purge jobs after 24 hours. If the job causes an error during execution, the XML file will contain a description of the error and there will...

Provider: University of Boston (Center for Advanced Genomics Technology) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://biowulf.bu.edu/zlab/promoser/promoser.wsdl | 2 SOAP Operations
PASSED
WSDBFetchServerLegacyService SOAP Gb
Views 193 Favourites 0
aka WSDbfetch Legacy (RPC/encoded SOAP) aka DBFetch
Annotations: 48 Total number of annotations from the provider's definition / description document. 29 Total number of annotations submitted by members of the BioCatalogue. 17 Total number of annotations sourced from other registries. 2
from provider's description doc (3 months ago)
WSDbfetch: entry retrieval using entry identifiers or accession numbers for various biological databases, including EMBL-Bank, InterPro, MEDLINE, Patent Proteins, PDB, RefSeq, UniParc, UniProtKB and UniRef. Note: this interface is deprecated and is only provided for compatibility with old clients, for other interfaces please see the documentation (http://www.ebi.ac.uk/Tools/webservices/services/dbfetch).
by Franck Tanoh (about 1 year ago)
The services retrieves entries (sequences, litterature abstract, protein structure information, etc) from various up-to-date biological databases using databases entry identifiers or accession numbers. Supported databases (complete list can be found on the web interface): EMBL, Ensembl, UniProt, UniRef, UniSave, RefSeq, Medline, PDB, InterPro, HGVbase, GenomeReviews, interPro. Web interface: http://www.ebi.ac.uk/cgi-bin/dbfetch

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: SeekDa (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl | 7 SOAP Operations
PASSED
DBFetch SOAP Gb
Views 795 Favourites 2
aka WSDbfetch (RPC/encoded SOAP) aka WSDbfetch (SOAP) aka WSDbfetch
Annotations: 126 Total number of annotations from the provider's definition / description document. 28 Total number of annotations submitted by members of the BioCatalogue. 98 Total number of annotations sourced from other registries. 0
by Franck Tanoh (9 months ago)
The service retrieves entries (sequences, literature abstract, protein structure information, etc) from various up-to-date biological databases using databases entry identifiers or accession numbers. Supported databases (complete list can be found on the web interface): EMBL, Ensembl, UniProt, UniRef, UniSave, RefSeq, Medline, PDB, InterPro, HGVbase, GenomeReviews, interPro. Web interface: http://www.ebi.ac.uk/cgi-bin/dbfetch
by Hamish McWilliam (3 months ago)
An equivalent document/literal SOAP interface to the service is also available (http://www.biocatalogue.org/services/2654).

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSDbfetch.wsdl | 7 SOAP Operations
PASSED
wsdbfetch REST Gb
Views 151 Favourites 0
aka WSDbfetch (REST) aka dbfetch
Annotations: 21 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 21 Total number of annotations sourced from other registries. 0
by Rodrigo Lopez (about 1 year ago)
WSDbfetch allows you to retrieve entries from various up-to-date biological databases using entry identifiers or accession numbers. This is equivalent to the CGI based dbfetch service. Like the CGI service a request can return a maximum of 200 entries.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
Base URL: http://www.ebi.ac.uk/Tools/webservices/rest/dbfetch | 0 REST Endpoints
WARNING
getNASCArraysExpDescriptionByReferenceNumberService SOAP Gb
Views 62 Favourites 0
Annotations: 9 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 2
from provider's description doc (3 months ago)
Authority: arabidopsis.info - Retrieves NASCArrays experiment description for a given from NASCArrays reference number from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: NASCARRAYS-136.

Provider: University of Nottingham | Submitter / Source: SeekDa (about 1 year ago)

Tags on this service:
WSDL Location: http://biomoby.org/services/wsdl/arabidopsis.info/getNASCArraysExpDescriptionByReferenceNumber | 1 SOAP Operation
PASSED
getDragonLocusAllelesService SOAP Ca
Views 33 Favourites 0
Annotations: 15 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 3
from provider's description doc (3 months ago)
Authority: antirrhinum.net - Retrieves collection of Antirrhinum alleles for a given Locus
by markw (about 1 year ago)
Consumes a locus name identifier from the DragonDB Antirrhinum majus (Snapdragon) database at antirrhinum.net. Returns a list of DragonDB allele identifiers for all known allelese of that locus. This is a BioMoby service.

Provider: Calgary | Submitter / Source: SeekDa (about 1 year ago)

Tags on this service:
WSDL Location: http://biomoby.org/services/wsdl/antirrhinum.net/getDragonLocusAlleles | 1 SOAP Operation
PASSED
EMBOSS seqwords SOAPSoaplab Gb
Views 65 Favourites 0
aka seqwords
Categories:
Annotations: 42 Total number of annotations from the provider's definition / description document. 32 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 1
from provider's description doc (2 months ago)
Generates DHF files from keyword search of UniProt.
by Franck Tanoh (about 1 year ago)
Generates DHF files (domain hits files) of database hits (sequences) from Uniprot matching keywords from a keywords file
by uludag (6 months ago)
Generates DHF files from keyword search of UniProt.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: uludagGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://www.ebi.ac.uk:80/soaplab/typed/services | WSDL Location: http://www.ebi.ac.uk/soaplab/typed/services/protein_3d_structure.seqwords?wsdl | 10 SOAP Operations
PASSED
Gtop SOAP Jp
Views 116 Favourites 0
aka Genome To Protein
Annotations: 52 Total number of annotations from the provider's definition / description document. 9 Total number of annotations submitted by members of the BioCatalogue. 11 Total number of annotations sourced from other registries. 32
by Franck Tanoh (about 1 year ago)
Get a detail information by gene and organism from the Genome To Protein (GTOP) database. GTOP is a database consisting of data analyses of proteins identified by various genome projects. This database mainly uses sequence homology analyses and features extensive utilization of information on three-dimensional structures.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/Gtop.wsdl | 3 SOAP Operations
PASSED
WSDBFetchServerLegacyService SOAP
Views 109 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

ARSA SOAP Jp
Views 176 Favourites 0
Annotations: 176 Total number of annotations from the provider's definition / description document. 42 Total number of annotations submitted by members of the BioCatalogue. 43 Total number of annotations sourced from other registries. 91
by Franck Tanoh (7 months ago)
Keyword search system against over 20 life sciences databases developed by DDBJ

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/ARSA.wsdl | 8 SOAP Operations
PASSED