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Tag "rna structure" returned 3 services

RNAforesterImplementationService SOAP De
Views 121 Favourites 0
Annotations: 33 Total number of annotations from the provider's definition / description document. 24 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 4
by Franck Tanoh (3 months ago)
RNAforester is a command line based tool for comparing RNA secondary structures. It supports the computation of pairwise and multiple alignment of structures based on the tree alignment model (http://bibiserv.techfak.uni-bielefeld.de/rnaforester/diss_hoechsmann.pdf).

Provider: Bielefeld University | Submitter / Source: Eric E. NzuobontaneGb (about 1 year ago)

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WSDL Location: http://bibiserv.techfak.uni-bielefeld.de/wsdl/RNAforester.wsdl | 8 SOAP Operations
PASSED
knotinframeImplementationService SOAP De
Views 30 Favourites 0
aka knotInframe
Annotations: 16 Total number of annotations from the provider's definition / description document. 5 Total number of annotations submitted by members of the BioCatalogue. 11 Total number of annotations sourced from other registries. 0
by Franck Tanoh (3 months ago)
KnotInFrame is a pipeline to predict ribosomal -1 frameshift sites with a simple pseudoknot as secondary structure in DNA and RNA sequences. The prediction is based on a comparison between the minimal free energy (mfe) structure calculated by RNAfold ( http://www.tbi.univie.ac.at/~ivo/RNA/ ) from the Vienna package and the mfe-structure computed by a modified version of pknotsRG-mfe, called pknotsRG-frameshift developed by J. Reeder/R.Giegerich.

Provider: Bielefeld University | Submitter / Source: Franck TanohGb (3 months ago)

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WSDL Location: http://bibiserv.techfak.uni-bielefeld.de/wsdl/knotinframe.wsdl | 2 SOAP Operations
PASSED
RNAStructMLImplementationService SOAP De
Views 44 Favourites 0
Annotations: 27 Total number of annotations from the provider's definition / description document. 6 Total number of annotations submitted by members of the BioCatalogue. 19 Total number of annotations sourced from other registries. 2
by Franck Tanoh (3 months ago)
RNAStructML is a format for storing RNA secondary structure information. RNAStructML is based on SequenceML and uses Vienna style DotBracket strings for storing the structure information. The service converts and reverts RNA structure information from DotBracketFasta to RNAStructML.

Provider: Bielefeld University | Submitter / Source: SeekDa (about 1 year ago)

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WSDL Location: http://bibiwsserv.techfak.uni-bielefeld.de/biodomws/axis/RNAStructML?wsdl | 2 SOAP Operations
PASSED