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Member of the BioCatalogue Franck Tanoh


Profile

Display Name:
Franck Tanoh

Email address:
ytanoh [at] cs.man.ac.uk

Affiliation:
University of Manchester

Country:
United Kingdom

Services Submitted (106)

RefSeq SOAP Jp
Views 85 Favourites 0
Categories:
Annotations: 44 Total number of annotations from the provider's definition / description document. 8 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 27
by Franck Tanoh (6 months ago)
Search RefSeq. The Reference Sequence (RefSeq) is developed by NCBI and provides a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products, for major research organisms.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/RefSeq.wsdl | 2 SOAP Operations
PASSED
TxSearch SOAP Jp
Views 55 Favourites 0
Categories:
Annotations: 109 Total number of annotations from the provider's definition / description document. 26 Total number of annotations submitted by members of the BioCatalogue. 17 Total number of annotations sourced from other registries. 66
by Franck Tanoh (6 months ago)
TXSearch is a retrieval system for a Taxonomy Database which was unified by DDBJ, GenBank and EMBL , which is developed by DDBJ

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
none
WSDL Location: http://xml.nig.ac.jp/wsdl/TxSearch.wsdl | 5 SOAP Operations
PASSED
SPS SOAP Jp
Views 58 Favourites 0
Annotations: 47 Total number of annotations from the provider's definition / description document. 10 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 32
by Franck Tanoh (7 months ago)
SPS stands for Splicing Profile based Score and is a new method to compare two amino acid sequences. The service Gets Splicing Profile Score of specified locations.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
none
WSDL Location: http://xml.nig.ac.jp/wsdl/SPS.wsdl | 2 SOAP Operations
PASSED
GIBEnv SOAP Jp
Views 57 Favourites 0
Categories:
Annotations: 24 Total number of annotations from the provider's definition / description document. 5 Total number of annotations submitted by members of the BioCatalogue. 19 Total number of annotations sourced from other registries. 0
by Franck Tanoh (6 months ago)
GIBEnv stands for Genome Information Broker for Environmental samples and it is a database which is added annotation information against DDBJ environmental division. Use this service to search GIBEnv database.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/GIBEnv.wsdl | 1 SOAP Operation
PASSED
GIBV SOAP Jp
Views 67 Favourites 0
Annotations: 35 Total number of annotations from the provider's definition / description document. 25 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
by Franck Tanoh (6 months ago)
Genome Information Broker for Viruses (GIB-V) is a complete virus genome database. Website: http://gib-v.genes.nig.ac.jp/

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/GIBV.wsdl | 8 SOAP Operations
PASSED
GTPS SOAP Jp
Views 56 Favourites 0
Annotations: 37 Total number of annotations from the provider's definition / description document. 23 Total number of annotations submitted by members of the BioCatalogue. 14 Total number of annotations sourced from other registries. 0
by Franck Tanoh (7 months ago)
"GTPS" is acronym of Gene Trek in Procaryote Space. Various complete genomes of eubacteria and archaea have been registered in the International Nucleotide Sequence Databases (INSD) of DDBJ/EMBL/GenBank. The annotation and sequence data are available from GIB (Genome Information Broker; http://gib.genes.nig.ac.jp/). However, annotations for genomic sequence of eubacteria and archaea released from INSD are often carried out by the different protocols such as minimum length of the ORF specified by the prediction program, threshold value of blast search and version number of the reference data used for blast and motif scan. Therefore, some inconsistencies of the ORF data are found in genomic...

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
none
WSDL Location: http://xml.nig.ac.jp/wsdl/GTPS.wsdl | 8 SOAP Operations
PASSED
Gtop SOAP Jp
Views 116 Favourites 0
aka Genome To Protein
Annotations: 52 Total number of annotations from the provider's definition / description document. 9 Total number of annotations submitted by members of the BioCatalogue. 11 Total number of annotations sourced from other registries. 32
by Franck Tanoh (about 1 year ago)
Get a detail information by gene and organism from the Genome To Protein (GTOP) database. GTOP is a database consisting of data analyses of proteins identified by various genome projects. This database mainly uses sequence homology analyses and features extensive utilization of information on three-dimensional structures.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/Gtop.wsdl | 3 SOAP Operations
PASSED
Gib SOAP Jp
Views 100 Favourites 0
Annotations: 356 Total number of annotations from the provider's definition / description document. 82 Total number of annotations submitted by members of the BioCatalogue. 12 Total number of annotations sourced from other registries. 262
by Franck Tanoh (7 months ago)
GIB (Genome Information Broker) is the comprehensive data repository of complete microbial genomes in the public domain.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
none
WSDL Location: http://xml.nig.ac.jp/wsdl/Gib.wsdl | 22 SOAP Operations
PASSED
VecScreen SOAP Jp
Views 108 Favourites 0
Annotations: 83 Total number of annotations from the provider's definition / description document. 18 Total number of annotations submitted by members of the BioCatalogue. 24 Total number of annotations sourced from other registries. 41
by Franck Tanoh (6 months ago)
A system for quickly identifying segments of a nucleic acid sequence that may be of vector origin.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/VecScreen.wsdl | 4 SOAP Operations
PASSED
Fasta SOAP Jp
Views 102 Favourites 0
Annotations: 131 Total number of annotations from the provider's definition / description document. 28 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 94
by Franck Tanoh (6 months ago)
Finds regions of local similarity between Protein or DNA sequences

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/Fasta.wsdl | 5 SOAP Operations
PASSED

Other Services Responsible For (0)

Services Annotated (333)

NASCArraysGeneswingerByAGAffymetrixProbeSetIDService SOAP Gb
Views 38 Favourites 0
Categories:
Annotations: 7 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 1 Total number of annotations sourced from other registries. 3
from provider's description doc (3 months ago)
Authority: arabidopsis.info - Runs the analysis tool, GeneSwinger for a given Affymetrix probeset ID from the AG chip. (http://affy.arabidopsis.info). Example input: 13129_f_at.

Provider: University of Nottingham | Submitter / Source: SeekDa (about 1 year ago)

Tags on this service:
WSDL Location: http://biomoby.org/services/wsdl/arabidopsis.info/NASCArraysGeneswingerByAGAffymetrixProbeSetID | 1 SOAP Operation
PASSED
OligoSelection SOAP De
Views 41 Favourites 0
Categories:
Annotations: 24 Total number of annotations from the provider's definition / description document. 17 Total number of annotations submitted by members of the BioCatalogue. 1 Total number of annotations sourced from other registries. 6
from provider's description doc (3 months ago)
We offer two webservices for probe selection in DNA microarray experiments. DNA Microarrays can be used for the presence or absense of biological agents, the so called targets. To be able to distinguish between the targets, each target is encoded with some probes (here oligonucleotides) which are spotted on the microarray. After labeling the unknown target(s) with a fluorescent or radioactive dye the binding pattern to its probes is visible and the target can be analysed. To minimize costs of microarray experiments the number of probes coding a target should be reduced and at the same time the explicit coding has to be obtained. Here we present two functions which forfill these conditions...

Provider: Helmholtz Open Bioinformatics Technology (HOBIT) | Submitter / Source: SeekDa (about 1 year ago)

Tags on this service:
WSDL Location: http://projects.mi.fu-berlin.de/hobit/OligoSelection.wsdl | 4 SOAP Operations
PASSED
getExpressionRatioByProbeService SOAP Jp
Views 43 Favourites 0
Categories:
Annotations: 8 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 1 Total number of annotations sourced from other registries. 4
from provider's description doc (3 months ago)
Authority: www.nias.affrc.go.jp - Get expression data on a probe derived from microarray experiment.

Provider: National Institute of Agrobiological Sciences (NIAS) | Submitter / Source: SeekDa (about 1 year ago)

Tags on this service:
WSDL Location: http://biomoby.org/services/wsdl/www.nias.affrc.go.jp/getExpressionRatioByProbe | 1 SOAP Operation
PASSED
RldaService SOAP Us
Views 43 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

NASCArraysGeneswingerByATH1AffymetrixProbeSetIDService SOAP Gb
Views 50 Favourites 0
Categories:
Annotations: 7 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 1 Total number of annotations sourced from other registries. 3
from provider's description doc (3 months ago)
Authority: arabidopsis.info - Runs the analysis tool, GeneSwinger for a given Affymetrix probeset ID from the ATH1 chip. (http://affy.arabidopsis.info). Example input: 252056_at.

Provider: University of Nottingham | Submitter / Source: SeekDa (about 1 year ago)

Tags on this service:
WSDL Location: http://biomoby.org/services/wsdl/arabidopsis.info/NASCArraysGeneswingerByATH1AffymetrixProbeSetID | 1 SOAP Operation
PASSED
ProbedesignService SOAP Us
Views 67 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

getGeneExpressionByReporterService SOAP Jp
Views 48 Favourites 0
Annotations: 9 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 2 Total number of annotations sourced from other registries. 4
from provider's description doc (3 months ago)
Authority: www.nias.affrc.go.jp - Get expression data on a probe derived from microarray experiment.

Provider: National Institute of Agrobiological Sciences (NIAS) | Submitter / Source: SeekDa (about 1 year ago)

Tags on this service:
WSDL Location: http://biomoby.org/services/wsdl/www.nias.affrc.go.jp/getGeneExpressionByReporter | 1 SOAP Operation
PASSED
MulttestService SOAP Us
Views 54 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

RServeAxisService SOAP At
Views 61 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

RankgeneService SOAP Us
Views 48 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

Favourites (8)

DBFetch SOAP Gb
Views 795 Favourites 2
aka WSDbfetch (RPC/encoded SOAP) aka WSDbfetch (SOAP) aka WSDbfetch
Annotations: 126 Total number of annotations from the provider's definition / description document. 28 Total number of annotations submitted by members of the BioCatalogue. 98 Total number of annotations sourced from other registries. 0
by Franck Tanoh (9 months ago)
The service retrieves entries (sequences, literature abstract, protein structure information, etc) from various up-to-date biological databases using databases entry identifiers or accession numbers. Supported databases (complete list can be found on the web interface): EMBL, Ensembl, UniProt, UniRef, UniSave, RefSeq, Medline, PDB, InterPro, HGVbase, GenomeReviews, interPro. Web interface: http://www.ebi.ac.uk/cgi-bin/dbfetch
by Hamish McWilliam (3 months ago)
An equivalent document/literal SOAP interface to the service is also available (http://www.biocatalogue.org/services/2654).

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSDbfetch.wsdl | 7 SOAP Operations
PASSED

WSInterProScanService SOAP Gb
Views 301 Favourites 1
aka WSInterProScan aka InterProScan
Annotations: 72 Total number of annotations from the provider's definition / description document. 29 Total number of annotations submitted by members of the BioCatalogue. 41 Total number of annotations sourced from other registries. 2
by joecker (9 months ago)
InterProScan runs a lot of tools for protein domain prediction (against different databases). The results are mapped to InterPro identifiers to get additional information and identify same domains in different databases. Please note that not all protein domains are included in InterPro, but are in the result of InterProScan.
by joecker (9 months ago)
Please note that some tools in InterProScan use Hidden Markow Models and are therefore very slow.
by joecker (9 months ago)
The web service can be used in synchronous and asynchronous mode.
by Franck Tanoh (9 months ago)
InterPro is a database of protein families, domains, regions, repeats and sites in which identifiable features found in known proteins can be applied to new protein sequences. This service allows you to query your protein sequence or protein sequence identifier against InterPro. Home: http://www.ebi.ac.uk/Tools/InterProScan/

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl | 7 SOAP Operations
PASSED

EasyGene - Prediction of genes in prokaryotes SOAP Dk
Views 319 Favourites 1
aka EasyGene
Categories:
Annotations: 28 Total number of annotations from the provider's definition / description document. 1 Total number of annotations submitted by members of the BioCatalogue. 20 Total number of annotations sourced from other registries. 7
from provider's description doc (about 1 year ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. http://www.cbs.dtu.dk/services/EasyGene/ This service is fully asynchronous; the usage is split into the following three operations, which is usually executed in this order. Procedures and messages used are either common and shared ...
by Franck Tanoh (about 1 year ago)
Produces a list of predicted genes given a sequence of prokaryotic DNA. Interface: http://www.cbs.dtu.dk/services/EasyGene/
by kwolstencroft (about 1 year ago)
A gene prediction service for prokaryotic DNA
by rapacki (6 months ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. Alongside this Web Service EasyGene method is also implemented as an interactive server at: http://www.cbs.dtu.dk/services/EasyGene/

Provider: Center for Biological Sequence Analysis (CBS) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.cbs.dtu.dk/ws/EasyGene/EasyGene_1_2a_ws0.wsdl | 3 SOAP Operations
PASSED

KEGG SOAP Jp
Views 547 Favourites 2
Annotations: 1283 Total number of annotations from the provider's definition / description document. 192 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 1076
by Franck Tanoh (about 1 year ago)
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database of biological systems, consisting of genetic building blocks of genes and proteins (KEGG GENES), chemical building blocks of both endogenous and exogenous substances (KEGG LIGAND), molecular wiring diagrams of interaction and reaction networks (KEGG PATHWAY), and hierarchies and relationships of various biological objects (KEGG BRITE). KEGG provides a reference knowledge base for linking genomes to biological systems and also to environments by the processes of PATHWAY mapping and BRITE mapping. This service allows you to access or retrieve data (genes, pathways, enzyme, drugs, etc) from KEGG. KEGG home page: http://www.g...

Provider: KEGG | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://soap.genome.jp/KEGG.wsdl | 72 SOAP Operations
PASSED

AccessionMapper(PICR) SOAP Gb
Views 184 Favourites 1
aka PICR
Annotations: 28 Total number of annotations from the provider's definition / description document. 9 Total number of annotations submitted by members of the BioCatalogue. 19 Total number of annotations sourced from other registries. 0
by Rodrigo Lopez (about 1 year ago)
Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge. This is a common problem when attempting to unify datasets that have been annotated with proteins from multiple data sources or querying data providers with one flavour of protein identifiers when the source database uses another. The Protein Identifier Cross-Reference (PICR) service is a web application that provides interactive and programmatic (SOAP and REST) access to a mapping algorithm that uses the UniProt Archive (UniParc) as a data warehouse to offer protein cross-references base...

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/picr/service?wsdl | 3 SOAP Operations
PASSED

MINT PSICQUIC Service REST It
Views 121 Favourites 1
aka http://code.google.com/p/psicquic/wiki/RestAccess
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by brunoaranda (9 months ago)
PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. This specific implementation provides remote access to the MINT database.

Provider: Protemics Standard Initiative Common Query InterfaCe (PSICQUIC) | Submitter / Source: brunoaranda (9 months ago)

Tags on this service:
Base URL: http://mint.bio.uniroma2.it/mint/psicquic/webservices/current/search/version | 0 REST Endpoints
WARNING

TFmodeller SOAP Mx
Views 128 Favourites 1
Annotations: 30 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 12
by Franck Tanoh (about 1 year ago)
The TFmodeller program scans a protein sequence P against a library of protein-DNA complexes and builds comparative models of P if good templates are found. These models are used to get an idea of the P-DNA interface, its evolution and the putative recognised DNA sequences.

Provider: University of Mexico (Center for Genomic Sciences of the National Autonomous) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://maya.ccg.unam.mx:8080/axis/TFmodellerService.jws?WSDL | 1 SOAP Operation
PASSED

Database of Protein Subcellular Localization Service SOAP Cn
Views 154 Favourites 1
Annotations: 99 Total number of annotations from the provider's definition / description document. 23 Total number of annotations submitted by members of the BioCatalogue. 76 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
Retrieves information from the database of protein subcellular localization (DBSubLoc). This database contains proteins from primary protein database such as SWISS-PROT and PIR. By collecting the subcellular localization annotation, these information are classified and categorized by cross referencs to taxonomies and Gene Ontology database.

Provider: Institute of Bioinformatics, Tsinghua University | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.bioinfo.tsinghua.edu.cn/~tigerchen/SubLoc.wsdl | 7 SOAP Operations
PASSED