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Member of the BioCatalogue Franck Tanoh


Profile

Display Name:
Franck Tanoh

Email address:
ytanoh [at] cs.man.ac.uk

Affiliation:
University of Manchester

Country:
United Kingdom

Services Submitted (106)

SRS SOAP Jp
Views 58 Favourites 0
Annotations: 68 Total number of annotations from the provider's definition / description document. 18 Total number of annotations submitted by members of the BioCatalogue. 3 Total number of annotations sourced from other registries. 47
by Franck Tanoh (7 months ago)
Execute SRS specified with query and parameter. THIS SERVICE HAS BEEN TERMINATED.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
none
WSDL Location: http://xml.nig.ac.jp/wsdl/SRS.wsdl | 4 SOAP Operations
PASSED
ARSA SOAP Jp
Views 176 Favourites 0
Annotations: 176 Total number of annotations from the provider's definition / description document. 42 Total number of annotations submitted by members of the BioCatalogue. 43 Total number of annotations sourced from other registries. 91
by Franck Tanoh (7 months ago)
Keyword search system against over 20 life sciences databases developed by DDBJ

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/ARSA.wsdl | 8 SOAP Operations
PASSED
KEGG SOAP Jp
Views 547 Favourites 2
Annotations: 1283 Total number of annotations from the provider's definition / description document. 192 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 1076
by Franck Tanoh (about 1 year ago)
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database of biological systems, consisting of genetic building blocks of genes and proteins (KEGG GENES), chemical building blocks of both endogenous and exogenous substances (KEGG LIGAND), molecular wiring diagrams of interaction and reaction networks (KEGG PATHWAY), and hierarchies and relationships of various biological objects (KEGG BRITE). KEGG provides a reference knowledge base for linking genomes to biological systems and also to environments by the processes of PATHWAY mapping and BRITE mapping. This service allows you to access or retrieve data (genes, pathways, enzyme, drugs, etc) from KEGG. KEGG home page: http://www.g...

Provider: KEGG | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://soap.genome.jp/KEGG.wsdl | 72 SOAP Operations
PASSED
GetEntry -- Data retrieval by accession numbers etc -- (DDBJ) SOAP Jp
Views 419 Favourites 0
aka ddbj
Annotations: 1170 Total number of annotations from the provider's definition / description document. 318 Total number of annotations submitted by members of the BioCatalogue. 230 Total number of annotations sourced from other registries. 622
by Franck Tanoh (about 1 year ago)
Database search and entry retrieval by accession number against DDBJ and other biological molecular database.
by DDBJ (6 months ago)
  Service Description "getentry" provides an easy way to retrieve entries from various databases at DDBJ. Please see also the page in detail.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/GetEntry.wsdl | 88 SOAP Operations
PASSED
DDBJ SOAP Jp
Views 138 Favourites 0
Categories:
Annotations: 157 Total number of annotations from the provider's definition / description document. 33 Total number of annotations submitted by members of the BioCatalogue. 24 Total number of annotations sourced from other registries. 100
by Franck Tanoh (about 1 year ago)
Retrieve DDBJ entry. DDBJ (DNA Data Bank of Japan) is one of three summit databanks that construct DDBJ/EMBL/GenBank International Nucleotide Sequence Database, through close collaboration with EBI in Europe and NCBI in USA.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/DDBJ.wsdl | 7 SOAP Operations
PASSED
BLAST (DDBJ) SOAP Jp
Views 1057 Favourites 1
Annotations: 215 Total number of annotations from the provider's definition / description document. 42 Total number of annotations submitted by members of the BioCatalogue. 69 Total number of annotations sourced from other registries. 104
by Franck Tanoh (about 1 year ago)
BLAST finds regions of similarity between biological sequences. This service might not be executable when servers for the analysis are busy. In this case, you will receive the following message: 'The search and analysis service is very busy now. Please try it again.'
by dave (6 months ago)
Uses the DDBJ's UniProt BLAST service that forms part of its Web API for Bioinformatics pages.

Provider: DNA Data Bank of Japan (DDBJ) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://xml.nig.ac.jp/wsdl/Blast.wsdl | 8 SOAP Operations
PASSED

Other Services Responsible For (0)

Services Annotated (333)

RsomService SOAP Us
Views 48 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

GOR III protein secondary structure prediction (CNRS IBCP) SOAP Fr
Views 71 Favourites 0
Annotations: 26 Total number of annotations from the provider's definition / description document. 13 Total number of annotations submitted by members of the BioCatalogue. 8 Total number of annotations sourced from other registries. 5
from provider's description doc (3 months ago)
GorIII @ IBCP (http://gbio-pbil.ibcp.fr)
by Franck Tanoh (about 1 year ago)
GOR3 is the third improvement of GOR secondary structure prediction method based on the information theory. In GOR3, pair information is used instead of directional information as in GOR1 and GOR2. Scores are computed only for 3 conformational states.

Provider: Institut de Biologie et Chimie des Proteines (IBCP) | Submitter / Source: ElotoFr (about 1 year ago)

Tags on this service:
WSDL Location: http://gbio-pbil.ibcp.fr/media/wsdl/GorIIIWS.wsdl | 4 SOAP Operations
PASSED
EMBOSS sigscan SOAPSoaplab Gb
Views 55 Favourites 0
aka sigscan
Annotations: 44 Total number of annotations from the provider's definition / description document. 32 Total number of annotations submitted by members of the BioCatalogue. 11 Total number of annotations sourced from other registries. 1
from provider's description doc (2 months ago)
Generates hits (DHF file) from a signature search
by Franck Tanoh (about 1 year ago)
sigscan scans a signature such as that generated by the EMBOSS application siggen against a protein sequence database and generates files of scored hits and corresponding alignments. An (optionally grouped) scop families file can be provided in which case a classification of hits is provided in the signature hits output file
by uludag (6 months ago)
Generate hits (DHF file) from a signature search.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: uludagGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://www.ebi.ac.uk:80/soaplab/typed/services | WSDL Location: http://www.ebi.ac.uk/soaplab/typed/services/protein_3d_structure.sigscan?wsdl | 10 SOAP Operations
PASSED
EMBOSS garnier SOAPSoaplab Gb
Views 66 Favourites 0
aka garnier
Annotations: 40 Total number of annotations from the provider's definition / description document. 32 Total number of annotations submitted by members of the BioCatalogue. 7 Total number of annotations sourced from other registries. 1
from provider's description doc (2 months ago)
Predicts protein secondary structure using GOR method
by uludag (6 months ago)
Predicts protein secondary structure using GOR method

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: uludagGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://www.ebi.ac.uk:80/soaplab/typed/services | WSDL Location: http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.garnier?wsdl | 10 SOAP Operations
PASSED
EMBOSS helixturnhelix SOAPSoaplab Gb
Views 50 Favourites 0
aka helixturnhelix
Annotations: 45 Total number of annotations from the provider's definition / description document. 32 Total number of annotations submitted by members of the BioCatalogue. 12 Total number of annotations sourced from other registries. 1
from provider's description doc (2 months ago)
Identify nucleic acid-binding motifs in protein sequences
by Franck Tanoh (about 1 year ago)
helixturnhelix uses the method of Dodd and Egan and finds helix-turn-helix nucleic acid binding motifs in proteins. The helix-turn-helix motif was originally identified as the DNA-binding domain of phage repressors. One alpha-helix lies in the wide groove of DNA; the other lies at an angle across DNA.
by uludag (6 months ago)
Identify nucleic acid-binding motifs in protein sequences

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: uludagGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://www.ebi.ac.uk:80/soaplab/typed/services | WSDL Location: http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.helixturnhelix?wsdl | 10 SOAP Operations
PASSED
EMBOSS hmoment SOAPSoaplab Gb
Views 33 Favourites 0
aka hmoment
Annotations: 41 Total number of annotations from the provider's definition / description document. 32 Total number of annotations submitted by members of the BioCatalogue. 8 Total number of annotations sourced from other registries. 1
from provider's description doc (2 months ago)
Calculate and plot hydrophobic moment for protein sequence(s)
by Franck Tanoh (about 1 year ago)
hmoment plots or writes out the hydrophobic moment. Hydrophic moment is the hydrophobicity of a peptide measured for a specified angle of rotation per residue.
by uludag (6 months ago)
Calculate and plot hydrophobic moment for protein sequence(s)

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: uludagGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://www.ebi.ac.uk:80/soaplab/typed/services | WSDL Location: http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.hmoment?wsdl | 10 SOAP Operations
PASSED
EMBOSS pepcoil SOAPSoaplab Gb
Views 46 Favourites 0
aka pepcoil
Annotations: 42 Total number of annotations from the provider's definition / description document. 32 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 1
from provider's description doc (2 months ago)
Predicts coiled coil regions in protein sequences
by Franck Tanoh (about 1 year ago)
pepcoil calculates the probability of a coiled-coil structure for windows of 28 residues through a protein sequence using the method of Lupas A, van Dyke M & Stock J (1991); Science 252:1162-4
by uludag (6 months ago)
Predicts coiled coil regions in protein sequences

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: uludagGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://www.ebi.ac.uk:80/soaplab/typed/services | WSDL Location: http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepcoil?wsdl | 10 SOAP Operations
PASSED
pepwheelService SOAPSoaplab Gb
Views 44 Favourites 0
aka pepwheel
Annotations: 34 Total number of annotations from the provider's definition / description document. 32 Total number of annotations submitted by members of the BioCatalogue. 2 Total number of annotations sourced from other registries. 0
from provider's description doc (2 months ago)
Draw a helical wheel diagram for a protein sequence
by Franck Tanoh (about 1 year ago)
Displays peptide sequences in a helical representation. This gives a view of a helix from a protein sequence looking down the axis of the helix. It is useful for highlighting amphipathicity and other properties of residues around a helix.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: uludagGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://www.ebi.ac.uk:80/soaplab/typed/services | WSDL Location: http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepwheel?wsdl | 10 SOAP Operations
PASSED
pepnetService SOAPSoaplab Gb
Views 37 Favourites 0
aka pepnet
Annotations: 35 Total number of annotations from the provider's definition / description document. 32 Total number of annotations submitted by members of the BioCatalogue. 3 Total number of annotations sourced from other registries. 0
from provider's description doc (2 months ago)
Draw a helical net for a protein sequence
by Franck Tanoh (about 1 year ago)
This is a method of displaying the residues of a protein in a simple 3,4,3,4 repeating pattern that emulates at a simple level the arrangement of residues around an alpha helix. It is therefore easy to see patterns of amphipathicity that you may wish to investigate in more detail by using displays such as pepwheel ( http://beta.biocatalogue.org/services/228-pepwheelservice_201264 ). You can specify which residues to mark up in squares, diamonds and octagons.

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: uludagGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://www.ebi.ac.uk:80/soaplab/typed/services | WSDL Location: http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.pepnet?wsdl | 10 SOAP Operations
PASSED
EMBOSS tmap SOAPSoaplab Gb
Views 69 Favourites 0
aka tmap
Annotations: 42 Total number of annotations from the provider's definition / description document. 32 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 1
from provider's description doc (2 months ago)
Predict and plot transmembrane segments in protein sequences
by uludag (6 months ago)
Predict and plot transmembrane segments in protein sequences

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: uludagGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://www.ebi.ac.uk:80/soaplab/typed/services | WSDL Location: http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.tmap?wsdl | 10 SOAP Operations
PASSED

Favourites (8)

DBFetch SOAP Gb
Views 795 Favourites 2
aka WSDbfetch (RPC/encoded SOAP) aka WSDbfetch (SOAP) aka WSDbfetch
Annotations: 126 Total number of annotations from the provider's definition / description document. 28 Total number of annotations submitted by members of the BioCatalogue. 98 Total number of annotations sourced from other registries. 0
by Franck Tanoh (9 months ago)
The service retrieves entries (sequences, literature abstract, protein structure information, etc) from various up-to-date biological databases using databases entry identifiers or accession numbers. Supported databases (complete list can be found on the web interface): EMBL, Ensembl, UniProt, UniRef, UniSave, RefSeq, Medline, PDB, InterPro, HGVbase, GenomeReviews, interPro. Web interface: http://www.ebi.ac.uk/cgi-bin/dbfetch
by Hamish McWilliam (3 months ago)
An equivalent document/literal SOAP interface to the service is also available (http://www.biocatalogue.org/services/2654).

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSDbfetch.wsdl | 7 SOAP Operations
PASSED

WSInterProScanService SOAP Gb
Views 301 Favourites 1
aka WSInterProScan aka InterProScan
Annotations: 72 Total number of annotations from the provider's definition / description document. 29 Total number of annotations submitted by members of the BioCatalogue. 41 Total number of annotations sourced from other registries. 2
by joecker (9 months ago)
InterProScan runs a lot of tools for protein domain prediction (against different databases). The results are mapped to InterPro identifiers to get additional information and identify same domains in different databases. Please note that not all protein domains are included in InterPro, but are in the result of InterProScan.
by joecker (9 months ago)
Please note that some tools in InterProScan use Hidden Markow Models and are therefore very slow.
by joecker (9 months ago)
The web service can be used in synchronous and asynchronous mode.
by Franck Tanoh (9 months ago)
InterPro is a database of protein families, domains, regions, repeats and sites in which identifiable features found in known proteins can be applied to new protein sequences. This service allows you to query your protein sequence or protein sequence identifier against InterPro. Home: http://www.ebi.ac.uk/Tools/InterProScan/

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl | 7 SOAP Operations
PASSED

EasyGene - Prediction of genes in prokaryotes SOAP Dk
Views 319 Favourites 1
aka EasyGene
Categories:
Annotations: 28 Total number of annotations from the provider's definition / description document. 1 Total number of annotations submitted by members of the BioCatalogue. 20 Total number of annotations sourced from other registries. 7
from provider's description doc (about 1 year ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. http://www.cbs.dtu.dk/services/EasyGene/ This service is fully asynchronous; the usage is split into the following three operations, which is usually executed in this order. Procedures and messages used are either common and shared ...
by Franck Tanoh (about 1 year ago)
Produces a list of predicted genes given a sequence of prokaryotic DNA. Interface: http://www.cbs.dtu.dk/services/EasyGene/
by kwolstencroft (about 1 year ago)
A gene prediction service for prokaryotic DNA
by rapacki (6 months ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. Alongside this Web Service EasyGene method is also implemented as an interactive server at: http://www.cbs.dtu.dk/services/EasyGene/

Provider: Center for Biological Sequence Analysis (CBS) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.cbs.dtu.dk/ws/EasyGene/EasyGene_1_2a_ws0.wsdl | 3 SOAP Operations
PASSED

KEGG SOAP Jp
Views 547 Favourites 2
Annotations: 1283 Total number of annotations from the provider's definition / description document. 192 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 1076
by Franck Tanoh (about 1 year ago)
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database of biological systems, consisting of genetic building blocks of genes and proteins (KEGG GENES), chemical building blocks of both endogenous and exogenous substances (KEGG LIGAND), molecular wiring diagrams of interaction and reaction networks (KEGG PATHWAY), and hierarchies and relationships of various biological objects (KEGG BRITE). KEGG provides a reference knowledge base for linking genomes to biological systems and also to environments by the processes of PATHWAY mapping and BRITE mapping. This service allows you to access or retrieve data (genes, pathways, enzyme, drugs, etc) from KEGG. KEGG home page: http://www.g...

Provider: KEGG | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://soap.genome.jp/KEGG.wsdl | 72 SOAP Operations
PASSED

AccessionMapper(PICR) SOAP Gb
Views 184 Favourites 1
aka PICR
Annotations: 28 Total number of annotations from the provider's definition / description document. 9 Total number of annotations submitted by members of the BioCatalogue. 19 Total number of annotations sourced from other registries. 0
by Rodrigo Lopez (about 1 year ago)
Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge. This is a common problem when attempting to unify datasets that have been annotated with proteins from multiple data sources or querying data providers with one flavour of protein identifiers when the source database uses another. The Protein Identifier Cross-Reference (PICR) service is a web application that provides interactive and programmatic (SOAP and REST) access to a mapping algorithm that uses the UniProt Archive (UniParc) as a data warehouse to offer protein cross-references base...

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/picr/service?wsdl | 3 SOAP Operations
PASSED

MINT PSICQUIC Service REST It
Views 121 Favourites 1
aka http://code.google.com/p/psicquic/wiki/RestAccess
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by brunoaranda (9 months ago)
PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. This specific implementation provides remote access to the MINT database.

Provider: Protemics Standard Initiative Common Query InterfaCe (PSICQUIC) | Submitter / Source: brunoaranda (9 months ago)

Tags on this service:
Base URL: http://mint.bio.uniroma2.it/mint/psicquic/webservices/current/search/version | 0 REST Endpoints
WARNING

TFmodeller SOAP Mx
Views 128 Favourites 1
Annotations: 30 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 12
by Franck Tanoh (about 1 year ago)
The TFmodeller program scans a protein sequence P against a library of protein-DNA complexes and builds comparative models of P if good templates are found. These models are used to get an idea of the P-DNA interface, its evolution and the putative recognised DNA sequences.

Provider: University of Mexico (Center for Genomic Sciences of the National Autonomous) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://maya.ccg.unam.mx:8080/axis/TFmodellerService.jws?WSDL | 1 SOAP Operation
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Database of Protein Subcellular Localization Service SOAP Cn
Views 154 Favourites 1
Annotations: 99 Total number of annotations from the provider's definition / description document. 23 Total number of annotations submitted by members of the BioCatalogue. 76 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
Retrieves information from the database of protein subcellular localization (DBSubLoc). This database contains proteins from primary protein database such as SWISS-PROT and PIR. By collecting the subcellular localization annotation, these information are classified and categorized by cross referencs to taxonomies and Gene Ontology database.

Provider: Institute of Bioinformatics, Tsinghua University | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.bioinfo.tsinghua.edu.cn/~tigerchen/SubLoc.wsdl | 7 SOAP Operations
PASSED