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Member of the BioCatalogue Franck Tanoh


Profile

Display Name:
Franck Tanoh

Email address:
ytanoh [at] cs.man.ac.uk

Affiliation:
University of Manchester

Country:
United Kingdom

Services Submitted (106)

AnalysisWSAppLabImplService SOAPSoaplab It
Views 32 Favourites 0
aka getCabriFieldByField
Annotations: 62 Total number of annotations from the provider's definition / description document. 62 Total number of annotations submitted by members of the BioCatalogue. 0 Total number of annotations sourced from other registries. 0
No description(s) yet

Provider: National Cancer Research Institute of Genoa, Italy (NCRI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://bioinformatics.istge.it:8080/axis/services | WSDL Location: http://bioinformatics.istge.it:8080/axis/services/cabri_getz_services.getCabriFieldByField?wsdl | 23 SOAP Operations
PASSED
AnalysisWSAppLabImplService SOAPSoaplab It
Views 23 Favourites 0
aka getCabriEntriesByField
Annotations: 62 Total number of annotations from the provider's definition / description document. 62 Total number of annotations submitted by members of the BioCatalogue. 0 Total number of annotations sourced from other registries. 0
No description(s) yet

Provider: National Cancer Research Institute of Genoa, Italy (NCRI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://bioinformatics.istge.it:8080/axis/services | WSDL Location: http://bioinformatics.istge.it:8080/axis/services/cabri_getz_services.getCabriEntriesByField?wsdl | 23 SOAP Operations
PASSED
AnalysisWSAppLabImplService SOAPSoaplab It
Views 25 Favourites 0
aka helloworld
Annotations: 62 Total number of annotations from the provider's definition / description document. 62 Total number of annotations submitted by members of the BioCatalogue. 0 Total number of annotations sourced from other registries. 0
No description(s) yet

Provider: National Cancer Research Institute of Genoa, Italy (NCRI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://bioinformatics.istge.it:8080/axis/services | WSDL Location: http://bioinformatics.istge.it:8080/axis/services/classic.helloworld?wsdl | 23 SOAP Operations
PASSED
AnalysisWSAppLabImplService SOAPSoaplab It
Views 32 Favourites 0
aka getP53IdsByField
Annotations: 64 Total number of annotations from the provider's definition / description document. 62 Total number of annotations submitted by members of the BioCatalogue. 2 Total number of annotations sourced from other registries. 0
No description(s) yet

Provider: National Cancer Research Institute of Genoa, Italy (NCRI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://bioinformatics.istge.it:8080/axis/services | WSDL Location: http://bioinformatics.istge.it:8080/axis/services/p53_getz_services.getP53IdsByField?wsdl | 23 SOAP Operations
PASSED
AnalysisWSAppLabImplService SOAPSoaplab It
Views 18 Favourites 0
aka getP53FieldByField
Annotations: 62 Total number of annotations from the provider's definition / description document. 62 Total number of annotations submitted by members of the BioCatalogue. 0 Total number of annotations sourced from other registries. 0
No description(s) yet

Provider: National Cancer Research Institute of Genoa, Italy (NCRI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://bioinformatics.istge.it:8080/axis/services | WSDL Location: http://bioinformatics.istge.it:8080/axis/services/p53_getz_services.getP53FieldByField?wsdl | 23 SOAP Operations
PASSED
getP53EntriesByField SOAPSoaplab It
Views 22 Favourites 0
Annotations: 62 Total number of annotations from the provider's definition / description document. 62 Total number of annotations submitted by members of the BioCatalogue. 0 Total number of annotations sourced from other registries. 0
No description(s) yet

Provider: National Cancer Research Institute of Genoa, Italy (NCRI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://bioinformatics.istge.it:8080/axis/services | WSDL Location: http://bioinformatics.istge.it:8080/axis/services/p53_getz_services.getP53EntriesByField?wsdl | 23 SOAP Operations
PASSED
AnalysisWSAppLabImplService SOAPSoaplab It
Views 31 Favourites 0
aka dot
Annotations: 62 Total number of annotations from the provider's definition / description document. 62 Total number of annotations submitted by members of the BioCatalogue. 0 Total number of annotations sourced from other registries. 0
No description(s) yet

Provider: National Cancer Research Institute of Genoa, Italy (NCRI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Soaplab Server Base URL: http://bioinformatics.istge.it:8080/axis/services | WSDL Location: http://bioinformatics.istge.it:8080/axis/services/graphics.dot?wsdl | 23 SOAP Operations
PASSED
LiftOver SOAP
Views 74 Favourites 0
aka Lift Genome Annotations
Annotations: 13 Total number of annotations from the provider's definition / description document. 9 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
This tool converts genome coordinates and genome annotation files between assemblies. LiftOver:This tool converts genome coordinates and genome annotation files between assemblies. http://genome.ucsc.edu/cgi-bin/hgLiftOver 0.1 (beta service) http://api.bioinfo.no/clients/LiftOverClient.pl
by Franck Tanoh (about 1 year ago)
This service converts genome coordinates and genome annotation files between assemblies. website: http://genome.ucsc.edu/cgi-bin/hgLiftOver

Provider: Bergen Center for Computational Science | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://api.bioinfo.no/wsdl/LiftOverService.wsdl | 2 SOAP Operations
PASSED
Jaspar_service SOAP No
Views 52 Favourites 0
aka Jaspar
Annotations: 24 Total number of annotations from the provider's definition / description document. 17 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 2
from provider's description doc (3 months ago)
This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites. Profiles can be fetched as Position Frequency Matrices (PFM), Position Weight Matrices (PWM), or Information Content Matrices (ICM). JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Sandelin A, Alkema W, Engstrom P, Wasserman WW, Lenhard B. PMID: 14681366 http://jaspar.genereg.net/ 0.2 (beta service)
by Franck Tanoh (about 1 year ago)
This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites. Profiles can be fetched as Position Frequency Matrices (PFM), Position Weight Matrices (PWM), or Information Content Matrices (ICM). website: http://jaspar.genereg.net/

Provider: Bergen Center for Computational Science | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://api.bioinfo.no/wsdl/Jaspar_webservice_0.2.wsdl | 4 SOAP Operations
PASSED
ELMdb SOAP No
Views 88 Favourites 1
Annotations: 33 Total number of annotations from the provider's definition / description document. 13 Total number of annotations submitted by members of the BioCatalogue. 16 Total number of annotations sourced from other registries. 4
from provider's description doc (3 months ago)
--- service_documentation: sample_client: __content__: http://api.bioinfo.no/clients/ELMdb.py reference: __content__: "ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins.\n\ Puntervoll, P., Linding, R., Gem\xC3\xBCnd, C., Chabanis-Davidson, S., Mattingsdal, M., Cameron, S., Martin, D. M. A., Ausiello, G., Brannetti, B., Costantini, A., \n\ Ferr, F., Maselli, V., Via, A., Cesareni, G., Diella, F., Superti-Furga, G., Wyrwicz, L., Ramu, C., McGuigan, C., Gudavalli, R., Letunic, I., Bork, P.,\n\ Rychlewski, L., K\xC3\xBCster, B., Helmer-Citterich, M., Hunter, W. N., Aasland, R., Gibson, T. J. (2003). Nucleic Aci...
by Franck Tanoh (about 1 year ago)
Web service interface to the ELM (Eukaryotic Linear Motif) database. The ELM database contains descriptions of functional sites, representations of functional sites (ELMs) and known instances of ELMs (ELMInstances). website: http://elm.eu.org/
by Jan Christian (6 months ago)
test

Provider: Bergen Center for Computational Science | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://api.bioinfo.no/wsdl/ELMdb.wsdl | 12 SOAP Operations
PASSED

Other Services Responsible For (0)

Services Annotated (333)

ELMdb SOAP No
Views 88 Favourites 1
Annotations: 33 Total number of annotations from the provider's definition / description document. 13 Total number of annotations submitted by members of the BioCatalogue. 16 Total number of annotations sourced from other registries. 4
from provider's description doc (3 months ago)
--- service_documentation: sample_client: __content__: http://api.bioinfo.no/clients/ELMdb.py reference: __content__: "ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins.\n\ Puntervoll, P., Linding, R., Gem\xC3\xBCnd, C., Chabanis-Davidson, S., Mattingsdal, M., Cameron, S., Martin, D. M. A., Ausiello, G., Brannetti, B., Costantini, A., \n\ Ferr, F., Maselli, V., Via, A., Cesareni, G., Diella, F., Superti-Furga, G., Wyrwicz, L., Ramu, C., McGuigan, C., Gudavalli, R., Letunic, I., Bork, P.,\n\ Rychlewski, L., K\xC3\xBCster, B., Helmer-Citterich, M., Hunter, W. N., Aasland, R., Gibson, T. J. (2003). Nucleic Aci...
by Franck Tanoh (about 1 year ago)
Web service interface to the ELM (Eukaryotic Linear Motif) database. The ELM database contains descriptions of functional sites, representations of functional sites (ELMs) and known instances of ELMs (ELMInstances). website: http://elm.eu.org/
by Jan Christian (6 months ago)
test

Provider: Bergen Center for Computational Science | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://api.bioinfo.no/wsdl/ELMdb.wsdl | 12 SOAP Operations
PASSED
Jaspar_service SOAP No
Views 52 Favourites 0
aka Jaspar
Annotations: 24 Total number of annotations from the provider's definition / description document. 17 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 2
from provider's description doc (3 months ago)
This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites. Profiles can be fetched as Position Frequency Matrices (PFM), Position Weight Matrices (PWM), or Information Content Matrices (ICM). JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Sandelin A, Alkema W, Engstrom P, Wasserman WW, Lenhard B. PMID: 14681366 http://jaspar.genereg.net/ 0.2 (beta service)
by Franck Tanoh (about 1 year ago)
This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites. Profiles can be fetched as Position Frequency Matrices (PFM), Position Weight Matrices (PWM), or Information Content Matrices (ICM). website: http://jaspar.genereg.net/

Provider: Bergen Center for Computational Science | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://api.bioinfo.no/wsdl/Jaspar_webservice_0.2.wsdl | 4 SOAP Operations
PASSED
LiftOver SOAP
Views 74 Favourites 0
aka Lift Genome Annotations
Annotations: 13 Total number of annotations from the provider's definition / description document. 9 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
This tool converts genome coordinates and genome annotation files between assemblies. LiftOver:This tool converts genome coordinates and genome annotation files between assemblies. http://genome.ucsc.edu/cgi-bin/hgLiftOver 0.1 (beta service) http://api.bioinfo.no/clients/LiftOverClient.pl
by Franck Tanoh (about 1 year ago)
This service converts genome coordinates and genome annotation files between assemblies. website: http://genome.ucsc.edu/cgi-bin/hgLiftOver

Provider: Bergen Center for Computational Science | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://api.bioinfo.no/wsdl/LiftOverService.wsdl | 2 SOAP Operations
PASSED
RSATWebServices SOAP Ca
Views 38 Favourites 0
aka Regulatory Sequence Analysis Tools (RSAT)
Annotations: 50 Total number of annotations from the provider's definition / description document. 46 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
Web services for the Regulatory Sequence Analysis Tools (RSAT). Tools developed by Jacques van Helden (jvanheld@bigre.ulb.ac.be), SOAP/WSDL interface developed by Olivier Sand (oly@bigre.ulb.ac.be).
by Franck Tanoh (about 1 year ago)
Provides a series of operations designed for the detection of regulatory signals in non-coding sequences. Home page: http://rsat.ccb.sickkids.ca/RSAT_home.cgi

Provider: Regulatory Sequence Analysis Tools (RSAT) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://rsat.ccb.sickkids.ca/web_services/RSATWS.wsdl | 45 SOAP Operations
PASSED
acromine SOAP Gb
Views 77 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

WebServiceService SOAP Gb
Views 38 Favourites 0
Annotations: 58 Total number of annotations from the provider's definition / description document. 49 Total number of annotations submitted by members of the BioCatalogue. 5 Total number of annotations sourced from other registries. 4
by Franck Tanoh (about 1 year ago)
Web service interface for the Mouse atlas project. The service is used to retrieve information from the EMAP database. Home page: http://genex.hgu.mrc.ac.uk/

Provider: eMAP | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://genex.hgu.mrc.ac.uk/axis/services/ma?wsdl | 17 SOAP Operations
PASSED
PlantTFDB_WebService SOAP Cn
Views 30 Favourites 0
aka Plant Transcription Factor Databases
Annotations: 34 Total number of annotations from the provider's definition / description document. 14 Total number of annotations submitted by members of the BioCatalogue. 20 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
Allow access and retrieval of information from the Plant Transcription Factor Databases Home page: http://planttfdb.cbi.pku.edu.cn/

Provider: Peking University | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://planttfdb.cbi.pku.edu.cn/webservice/server.php?wsdl | 6 SOAP Operations
PASSED
blastProDom SOAP Fr
Views 109 Favourites 0
aka blast prodom database
Annotations: 28 Total number of annotations from the provider's definition / description document. 2 Total number of annotations submitted by members of the BioCatalogue. 23 Total number of annotations sourced from other registries. 3
from provider's description doc (about 1 year ago)
Contact : Daniel Kahn, kahn@biomserv.univ-lyon1.fr Reference : Servant F, Bru C, Carrière S, Courcelle E, Gouzy J, Peyruc D, Kahn D (2002) ProDom: Automated clustering of homologous domains. Briefings in Bioinformatics. vol 3, no 3:246-251
by Franck Tanoh (about 1 year ago)
Executes blast on a blast (blastn or blastp) on ProDom database (protein domain database). ProDom database home page: http://prodom.prabi.fr/prodom/current/html/home.php
by lauranne.duquenne (6 months ago)
blastProDom performs a blast (blastx or blastp) on the protein domain family database ProDom : enter a sequence (nucleotides or proteins, raw or fasta format) and it returns a blast output with the name of the families corresponding to the hits found, and a URL to get the image visualizing the blasted domains on the protein. A perl script is available to run this webservice from your computer. Please install SOAP Lite before.

Provider: PRABI - Rhone-Alpes Bioinformatics Center | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://prodom.prabi.fr/prodom/current/wsdl/blastliteral.wsdl | 1 SOAP Operation
PASSED
blastprodom SOAP Fr
Views 53 Favourites 0
aka psi-blast prodom database
Annotations: 23 Total number of annotations from the provider's definition / description document. 13 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
Performs a recursive psi-blast against the ProDom database. ProDom database website: http://prodom.prabi.fr/prodom/current/html/home.php

Provider: PRABI - Rhone-Alpes Bioinformatics Center | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://prodom.prabi.fr/prodom/current/wsdl/blastprodom.wsdl | 2 SOAP Operations
PASSED
FetchProDomService SOAP Fr
Views 50 Favourites 0
aka fetchProDom
Categories:
Annotations: 37 Total number of annotations from the provider's definition / description document. 24 Total number of annotations submitted by members of the BioCatalogue. 8 Total number of annotations sourced from other registries. 5
by Franck Tanoh (about 1 year ago)
Retrieve information from the ProDom database .
by The EMBRACE Registry (about 1 year ago)
fetchProDom is a set of five different webservices that interrogates the ProDom database. fetchdom: Enter one or several (separated by spaces) ProDom AC (eg PD000039) and it returns the family(ies) description in prodom format. fetchdom_fasta: same as above with the results given in fasta format. fetchdom_align: from one ProDom AC gives two output: one is the alignment of the proteins of the ProDom family and the other is the consensus sequence. This particular webservice is made to work with blastProDom. fetchdom_keyword: Enter one or several keyword(s)(separated by a blank space) and a “boolean”: and/or and it returns the ProDom familiy(ies) which have the keyword(s) in the description...

Provider: The Protein Domain Database (ProDom) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://prodom.prabi.fr/prodom/current/wsdl/fetchProDom.wsdl | 6 SOAP Operations
PASSED

Favourites (8)

DBFetch SOAP Gb
Views 795 Favourites 2
aka WSDbfetch (RPC/encoded SOAP) aka WSDbfetch (SOAP) aka WSDbfetch
Annotations: 126 Total number of annotations from the provider's definition / description document. 28 Total number of annotations submitted by members of the BioCatalogue. 98 Total number of annotations sourced from other registries. 0
by Franck Tanoh (9 months ago)
The service retrieves entries (sequences, literature abstract, protein structure information, etc) from various up-to-date biological databases using databases entry identifiers or accession numbers. Supported databases (complete list can be found on the web interface): EMBL, Ensembl, UniProt, UniRef, UniSave, RefSeq, Medline, PDB, InterPro, HGVbase, GenomeReviews, interPro. Web interface: http://www.ebi.ac.uk/cgi-bin/dbfetch
by Hamish McWilliam (3 months ago)
An equivalent document/literal SOAP interface to the service is also available (http://www.biocatalogue.org/services/2654).

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSDbfetch.wsdl | 7 SOAP Operations
PASSED

WSInterProScanService SOAP Gb
Views 301 Favourites 1
aka WSInterProScan aka InterProScan
Annotations: 72 Total number of annotations from the provider's definition / description document. 29 Total number of annotations submitted by members of the BioCatalogue. 41 Total number of annotations sourced from other registries. 2
by joecker (9 months ago)
InterProScan runs a lot of tools for protein domain prediction (against different databases). The results are mapped to InterPro identifiers to get additional information and identify same domains in different databases. Please note that not all protein domains are included in InterPro, but are in the result of InterProScan.
by joecker (9 months ago)
Please note that some tools in InterProScan use Hidden Markow Models and are therefore very slow.
by joecker (9 months ago)
The web service can be used in synchronous and asynchronous mode.
by Franck Tanoh (9 months ago)
InterPro is a database of protein families, domains, regions, repeats and sites in which identifiable features found in known proteins can be applied to new protein sequences. This service allows you to query your protein sequence or protein sequence identifier against InterPro. Home: http://www.ebi.ac.uk/Tools/InterProScan/

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl | 7 SOAP Operations
PASSED

EasyGene - Prediction of genes in prokaryotes SOAP Dk
Views 319 Favourites 1
aka EasyGene
Categories:
Annotations: 28 Total number of annotations from the provider's definition / description document. 1 Total number of annotations submitted by members of the BioCatalogue. 20 Total number of annotations sourced from other registries. 7
from provider's description doc (about 1 year ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. http://www.cbs.dtu.dk/services/EasyGene/ This service is fully asynchronous; the usage is split into the following three operations, which is usually executed in this order. Procedures and messages used are either common and shared ...
by Franck Tanoh (about 1 year ago)
Produces a list of predicted genes given a sequence of prokaryotic DNA. Interface: http://www.cbs.dtu.dk/services/EasyGene/
by kwolstencroft (about 1 year ago)
A gene prediction service for prokaryotic DNA
by rapacki (6 months ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. Alongside this Web Service EasyGene method is also implemented as an interactive server at: http://www.cbs.dtu.dk/services/EasyGene/

Provider: Center for Biological Sequence Analysis (CBS) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.cbs.dtu.dk/ws/EasyGene/EasyGene_1_2a_ws0.wsdl | 3 SOAP Operations
PASSED

KEGG SOAP Jp
Views 547 Favourites 2
Annotations: 1283 Total number of annotations from the provider's definition / description document. 192 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 1076
by Franck Tanoh (about 1 year ago)
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database of biological systems, consisting of genetic building blocks of genes and proteins (KEGG GENES), chemical building blocks of both endogenous and exogenous substances (KEGG LIGAND), molecular wiring diagrams of interaction and reaction networks (KEGG PATHWAY), and hierarchies and relationships of various biological objects (KEGG BRITE). KEGG provides a reference knowledge base for linking genomes to biological systems and also to environments by the processes of PATHWAY mapping and BRITE mapping. This service allows you to access or retrieve data (genes, pathways, enzyme, drugs, etc) from KEGG. KEGG home page: http://www.g...

Provider: KEGG | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://soap.genome.jp/KEGG.wsdl | 72 SOAP Operations
PASSED

AccessionMapper(PICR) SOAP Gb
Views 184 Favourites 1
aka PICR
Annotations: 28 Total number of annotations from the provider's definition / description document. 9 Total number of annotations submitted by members of the BioCatalogue. 19 Total number of annotations sourced from other registries. 0
by Rodrigo Lopez (about 1 year ago)
Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge. This is a common problem when attempting to unify datasets that have been annotated with proteins from multiple data sources or querying data providers with one flavour of protein identifiers when the source database uses another. The Protein Identifier Cross-Reference (PICR) service is a web application that provides interactive and programmatic (SOAP and REST) access to a mapping algorithm that uses the UniProt Archive (UniParc) as a data warehouse to offer protein cross-references base...

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/picr/service?wsdl | 3 SOAP Operations
PASSED

MINT PSICQUIC Service REST It
Views 121 Favourites 1
aka http://code.google.com/p/psicquic/wiki/RestAccess
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by brunoaranda (9 months ago)
PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. This specific implementation provides remote access to the MINT database.

Provider: Protemics Standard Initiative Common Query InterfaCe (PSICQUIC) | Submitter / Source: brunoaranda (9 months ago)

Tags on this service:
Base URL: http://mint.bio.uniroma2.it/mint/psicquic/webservices/current/search/version | 0 REST Endpoints
WARNING

TFmodeller SOAP Mx
Views 128 Favourites 1
Annotations: 30 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 12
by Franck Tanoh (about 1 year ago)
The TFmodeller program scans a protein sequence P against a library of protein-DNA complexes and builds comparative models of P if good templates are found. These models are used to get an idea of the P-DNA interface, its evolution and the putative recognised DNA sequences.

Provider: University of Mexico (Center for Genomic Sciences of the National Autonomous) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://maya.ccg.unam.mx:8080/axis/TFmodellerService.jws?WSDL | 1 SOAP Operation
PASSED

Database of Protein Subcellular Localization Service SOAP Cn
Views 154 Favourites 1
Annotations: 99 Total number of annotations from the provider's definition / description document. 23 Total number of annotations submitted by members of the BioCatalogue. 76 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
Retrieves information from the database of protein subcellular localization (DBSubLoc). This database contains proteins from primary protein database such as SWISS-PROT and PIR. By collecting the subcellular localization annotation, these information are classified and categorized by cross referencs to taxonomies and Gene Ontology database.

Provider: Institute of Bioinformatics, Tsinghua University | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.bioinfo.tsinghua.edu.cn/~tigerchen/SubLoc.wsdl | 7 SOAP Operations
PASSED