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Member of the BioCatalogue Franck Tanoh


Profile

Display Name:
Franck Tanoh

Email address:
ytanoh [at] cs.man.ac.uk

Affiliation:
University of Manchester

Country:
United Kingdom

Services Submitted (106)

ELMInstanceMapper SOAP No
Views 52 Favourites 0
Annotations: 27 Total number of annotations from the provider's definition / description document. 21 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 2
from provider's description doc (3 months ago)
This WSDL file describe the ELM Instance Mapper Web Service. It compares a query protein sequence with sequences known to contain ELM Instances. ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Puntervoll, P., Linding, R., Gemnd, C., Chabanis-Davidson, S., Mattingsdal, M., Cameron, S., Martin, D. M. A., Ausiello, G., Brannetti, B., Costantini, A., Ferr, F., Maselli, V., Via, A., Cesareni, G., Diella, F., Superti-Furga, G., Wyrwicz, L., Ramu, C., McGuigan, C., Gudavalli, R., Letunic, I., Bork, P., Rychlewski, L., Kster, B., Helmer-Citterich, M., Hunter, W. N., Aasland, R., Gibson, T. J. (2003). Nucleic Acids Res., 31: 3625-3630...
by Franck Tanoh (about 1 year ago)
The ELM instance mapper uses PHI-BLAST to map ELM predictions of a query sequence to known annotated ELM instances. The basis for the mapping is sequence similarity and positional conservation of the motif. If an ELM prediction is mapped to a known ELM instance, the prediction is given a score from 0 to 1, where 1 means that the query sequence is identical to the database sequence, and the prediction can be considered an experimentally verified ELM instance. The result of a successful ELM instance mapping is the raw PHI-BLAST output and a summary of the results with the calculated score. website: http://elm.eu.org/

Provider: Bergen Center for Computational Science | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://api.bioinfo.no/wsdl/ELMInstanceMapper.wsdl | 5 SOAP Operations
PASSED
ELMMatcher SOAP No
Views 37 Favourites 0
Annotations: 11 Total number of annotations from the provider's definition / description document. 5 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 2
from provider's description doc (3 months ago)
This service performs the basic mapping of ELM motifs to a query sequence. The service returns all matching ELMs to a query sequence. Note that this is not a complete prediction of functional site. Extensive filtering of the resulting list of ELMs will be necessary. ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Puntervoll, P., Linding, R., Gemnd, C., Chabanis-Davidson, S., Mattingsdal, M., Cameron, S., Martin, D. M. A., Ausiello, G., Brannetti, B., Costantini, A., Ferr, F., Maselli, V., Via, A., Cesareni, G., Diella, F., Superti-Furga, G., Wyrwicz, L., Ramu, C., McGuigan, C., Gudavalli, R., Letunic, I., Bork, P., Rychlewski,...
by Franck Tanoh (about 1 year ago)
This service performs the basic mapping of ELM (Eucaryotic Linear Motifs) motifs to a query sequence. The service returns all matching ELMs to a query sequence. Note that this is not a complete prediction of functional site. Extensive filtering of the resulting list of ELMs will be necessary. Web site: http://elm.eu.org/

Provider: Bergen Center for Computational Science | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://api.bioinfo.no/wsdl/ELMMatcher.wsdl | 1 SOAP Operation
PASSED
GeneCruiser SOAP Us
Views 98 Favourites 0
Categories:
Annotations: 35 Total number of annotations from the provider's definition / description document. 25 Total number of annotations submitted by members of the BioCatalogue. 8 Total number of annotations sourced from other registries. 2
by Franck Tanoh (2 months ago)
GeneCruiser allows users to annotate their genomic data by mapping microarray feature identifiers to gene identifiers from databases, such as UniGene, while providing links to web resources, such as the UCSC Genome Browser. website: http://genecruiser.broadinstitute.org/genecruiser3/pages/index.jsf

Provider: GenePattern | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.broad.mit.edu/webservices/genecruiser/services/Annotation?wsdl | 10 SOAP Operations
PASSED
BINDService SOAP Ie
Views 176 Favourites 0
aka BIND
Categories:
Annotations: 162 Total number of annotations from the provider's definition / description document. 39 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 117
by Franck Tanoh (4 months ago)
Allow access to BIND (Biomolecular Interaction Network Database) interaction, molecular complex, and pathway data. Note that the BIND database is no more public: http://www.nature.com/nbt/journal/v24/n2/full/nbt0206-115.html

Provider: Thomsom Reuters | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://soap.bind.ca/wsdl/bind.wsdl | 12 SOAP Operations
PASSED
WSNetChop_3_1 SOAP
Views 63 Favourites 0
aka NetChop - Prediction of proteasomal cleavages (MHC ligands) aka NetChop
Annotations: 19 Total number of annotations from the provider's definition / description document. 1 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 8
from provider's description doc (about 1 year ago)
INTRODUCTION This Web Service implements NetChop v. 3.1. It produces neural network predictions for cleavage sites of the human proteasome. The method is described in detail in the following article: The role of the proteasome in generating cytotoxic T cell epitopes: Insights obtained from improved predictions of proteasomal cleavage. M Nielsen, C Lundegaard, O Lund, and C Kesmir. Immunogenetics., 57(1-2):33-41, 2005. Alongside this Web Service the NetChop method is also implemented as a traditional click-and-paste WWW server at: http://www.cbs.dtu.dk/services/NetChop/ NetChop is also available as a stand-alone software package to install and ...
by Franck Tanoh (about 1 year ago)
Predict cleavage sites of the human proteasome. interface: http://www.cbs.dtu.dk/services/NetChop/
by The EMBRACE Registry (about 1 year ago)
NetChop produces neural network predictions for cleavage sites of the human proteasome. The method is described in detail in the following article: The role of the proteasome in generating cytotoxic T cell epitopes: Insights obtained from improved predictions of proteasomal cleavage. M Nielsen, C Lundegaard, O Lund, and C Kesmir. Immunogenetics., 57(1-2):33-41, 2005.

Provider: Center for Biological Sequence Analysis (CBS) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.cbs.dtu.dk/ws/NetChop/NetChop_3_1.wsdl | 3 SOAP Operations
PASSED
EasyGene - Prediction of genes in prokaryotes SOAP Dk
Views 319 Favourites 1
aka EasyGene
Categories:
Annotations: 28 Total number of annotations from the provider's definition / description document. 1 Total number of annotations submitted by members of the BioCatalogue. 20 Total number of annotations sourced from other registries. 7
from provider's description doc (about 1 year ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. http://www.cbs.dtu.dk/services/EasyGene/ This service is fully asynchronous; the usage is split into the following three operations, which is usually executed in this order. Procedures and messages used are either common and shared ...
by Franck Tanoh (about 1 year ago)
Produces a list of predicted genes given a sequence of prokaryotic DNA. Interface: http://www.cbs.dtu.dk/services/EasyGene/
by kwolstencroft (about 1 year ago)
A gene prediction service for prokaryotic DNA
by rapacki (6 months ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. Alongside this Web Service EasyGene method is also implemented as an interactive server at: http://www.cbs.dtu.dk/services/EasyGene/

Provider: Center for Biological Sequence Analysis (CBS) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.cbs.dtu.dk/ws/EasyGene/EasyGene_1_2a_ws0.wsdl | 3 SOAP Operations
PASSED
SIDDbase SOAP Dk
Views 60 Favourites 0
Annotations: 16 Total number of annotations from the provider's definition / description document. 1 Total number of annotations submitted by members of the BioCatalogue. 11 Total number of annotations sourced from other registries. 4
from provider's description doc (about 1 year ago)
SIDDbase-WS is a SOAP based Web Service created in a collaboration between the Comparative Microbial Genomics Group at CBS, The Technical University of Denmark and Prof. Craig Benham's research group at the UC Davis Genome Center. It provides interoperable access to the SIDD software, and access to the repository of stored results from calculations previously performed on complete bacterial genomes. SIDD (Stress-induced DNA Duplex Destabilization) is the propensity for the DNA duplex to be destabilized within genomic regions that are experiencing a superhelical stress. This is a complex, interactive attribute of genomic DNA, that has been implicated in a wide variety...

Provider: Center for Biological Sequence Analysis (CBS) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.cbs.dtu.dk/ws/SIDDbase/SIDDbase_1_0.wsdl | 4 SOAP Operations
PASSED
BLASTatlas SOAP Dk
Views 111 Favourites 0
aka BLASTatlas
Annotations: 26 Total number of annotations from the provider's definition / description document. 1 Total number of annotations submitted by members of the BioCatalogue. 16 Total number of annotations sourced from other registries. 9
from provider's description doc (about 1 year ago)
This service creates maps of genome homology of a list of sequences against a reference genome using either blastp, blastn, tblastn, or blastx. The resolution is per-residue or per nucleotide depending on the regime of the blast search: For each annotation in the reference genome, the best hit in the database genome is found using one of the above algorithms. Each matching or mismatching residue/nucleotide of the best hit (based on BLAST score) is then mapped back to the genome sequence, using the coordinates provided in the annotations. In the following, 'database' refers to the sequences being searched whereas 'reference' refers to the genome ...
by pfhallin (6 months ago)
This BLASTatlas service creates maps of genome homology of a list of sequences against a reference genome using either blastp, blastn, tblastn, or blastx. The resolution is per-residue or per nucleotide depending on the regime of the blast search: For each annotation in the reference genome, the best hit in the database genome is found using one of the above algorithms. Each matching or mismatching residue/nucleotide of the best hit (based on BLAST score) is then mapped back to the genome sequence, using the coordinates provided in the annotations. In the following, 'database' refers to the sequences being searched whereas 'reference' refers to the genome on to which the search is map...

Provider: Center for Biological Sequence Analysis (CBS) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.cbs.dtu.dk/ws/BLASTatlas/BLASTatlas_1_0_ws2.wsdl | 3 SOAP Operations
WARNING
iHOP_SOAP-rpc-literal SOAP Es
Views 81 Favourites 0
aka iHOP
Annotations: 86 Total number of annotations from the provider's definition / description document. 79 Total number of annotations submitted by members of the BioCatalogue. 7 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
--- "":
by Franck Tanoh (about 1 year ago)
The Information Hyperlinked over Proteins (iHOP) is a network of genes and proteins extends through the scientific literature, touching on phenotypes, pathologies and gene function. iHOP can access more than 10 million abstracts in PubMed. It navigates through more than 15 million sentences, 15000 organisms and more than 80000 different genes from humans, mice, D. melanogaster, C. elegans, zebrafish, Arabidopsis thaliana, yeast and Escherichia coli … website: http://www.ihop-net.org/UniPub/iHOP/

Provider: Instituto Nacional de Bioinformatica (INB) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://ubio.bioinfo.cnio.es/biotools/iHOP/wsdl/iHOP-SOAP-rpc-literal.wsdl | 24 SOAP Operations
PASSED
serviceName SOAP De
Views 45 Favourites 0
Annotations: 9 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 4 Total number of annotations sourced from other registries. 5
by Franck Tanoh (about 1 year ago)
It provides a common access point to interaction resources at MIPS (munich nformation center for protein sequences: http://mips.gsf.de/ ). It currently gives access to yeast protein-protein interaction data contained in CYGD (Comprehensive Yeast Genome Database: http://mips.gsf.de/genre/proj/yeast/index.jsp ). For more information: http://mips.gsf.de/genre/proj/mpact/

Provider: The Institute of Bioinformatics and Systems Biology (IBIS) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://mips.gsf.de/proj/hobitws/services/PsimiService?wsdl | 6 SOAP Operations
WARNING

Other Services Responsible For (0)

Services Annotated (333)

BLAST SOAP
Views 263 Favourites 0
Annotations: 41 Total number of annotations from the provider's definition / description document. 27 Total number of annotations submitted by members of the BioCatalogue. 14 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
WS-I compatible BLAST Web Service. 0.3 (testing service, not for production)
by Franck Tanoh (4 months ago)
Sequence similarity search using BLAST
by Franck Tanoh (2 months ago)
--- ServiceDocumentation: Version: 0.3 (testing service, not for production) xsi:schemaLocation: http://www.bccs.uib.no/ServiceDocumentation http://api.bioinfo.no/schema/ServiceDocumentation.xsd xmlns:doc: http://www.bccs.uib.no/ServiceDocumentation xmlns:xsi: http://www.w3.org/2001/XMLSchema-instance

Provider: Bergen Center for Computational Science | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://api.bioinfo.no/wsdl/Blast.wsdl | 8 SOAP Operations
PASSED
Hogenom SOAP Fr
Views 31 Favourites 0
Annotations: 14 Total number of annotations from the provider's definition / description document. 8 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
HOGENOM (Database of Complete Genome Homologous Genes Families) home page: http://pbil.univ-lyon1.fr/databases/hogenom.php

Provider: PRABI - Rhone-Alpes Bioinformatics Center | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://prodom.prabi.fr/prodom/current/wsdl/hogenom.wsdl | 2 SOAP Operations
PASSED
GoTermFinderService SOAP Gb
Views 59 Favourites 0
Annotations: 26 Total number of annotations from the provider's definition / description document. 16 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
Searches for significant shared GO terms, or parents of those GO terms, used to describe the genes in a given list to help discover what the genes may have in common. A Web Service interface to Go Term Finder (http://www.yeastgenome.org/cgi-bin/GO/goTermFinder.pl)

Provider: Manchester Interdisciplinary Biocentre (MIB) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://dbk-ed.mib.man.ac.uk:8080/GoTermFinder/services/GoTermFinder?wsdl | 5 SOAP Operations
PASSED
YeastAffymapperService SOAP Gb
Views 113 Favourites 0
Annotations: 150 Total number of annotations from the provider's definition / description document. 105 Total number of annotations submitted by members of the BioCatalogue. 42 Total number of annotations sourced from other registries. 3
by Franck Tanoh (about 1 year ago)
A web service wrapping of the annotation file for the Affymetrix Yeast Genome S98 Genechip Array. The service provides mappings of affymetrix probe set identifiers to yeast gene names, ORF numbers, chromosome location and alignments, and database identifiers in UniGene, Ensembl, EntrezGene, SwissProt, EC, OMIM, RefSeq, FlyBase, WormBase, SGD and the Gene Ontology.

Provider: Manchester Interdisciplinary Biocentre (MIB) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://dbk-ed.mib.man.ac.uk:8080/YeastAffymapper/services/YeastAffymapper?wsdl | 35 SOAP Operations
PASSED
YeastGOAnnotationService SOAP Gb
Views 111 Favourites 0
Annotations: 28 Total number of annotations from the provider's definition / description document. 17 Total number of annotations submitted by members of the BioCatalogue. 11 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
Provides ORFs, synonyms and GO terms for a given yeast gene name.

Provider: Manchester Interdisciplinary Biocentre (MIB) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://dbk-ed.mib.man.ac.uk:8080/YeastGOAnnotation/services/YeastGOAnnotation?wsdl | 5 SOAP Operations
PASSED
DBFetch REST Gb
Views 247 Favourites 0
aka WSDbfetch (REST)
Annotations: 19 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 19 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
Allows you to retrieve entries from various up-to-date biological databases using entry identifiers or accession numbers. 1. {db} is the database name (e.g. uniprotkb) 2. {id} is the entry identifier, either an ID (e.g. WAP_RAT) or an accession number (e.g. P01174) web interface: http://www.ebi.ac.uk/cgi-bin/dbfetch This service has also a SOAP (WSDL type) implementation: http://www.ebi.ac.uk/Tools/webservices/services/dbfetch SOAP entry in BioCatalogue: http://beta.biocatalogue.org/services/4-wsdbfetchserverlegacyservice_404849
by Rodrigo Lopez (about 1 year ago)
Further details about the databases available in this service can be obtained from http://www.ebi.ac.uk/Databases/ Examples: For obtaining entry ID 'wap_rat' from uniprot: http://www.ebi.ac.uk/Tools/webservices/rest/dbfetch/uniprot/wap_rat For entry ID 'AE014292' from EMBL-Bank: http://www.ebi.ac.uk/Tools/webservices/rest/dbfetch/embl/AE014292 For entry ID '1A02' in the PDB database: http://www.ebi.ac.uk/Tools/webservices/rest/dbfetch/pdb/1a02

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Base URL: http://www.ebi.ac.uk/Tools/webservices | 1 REST Endpoint
PASSED
uniprot REST Us
Views 188 Favourites 0
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
UniProt is a protein sequence and annotation database. query example using this REST service: http://www.uniprot.org/uniprot/P68441 http://www.uniprot.org/uniref/UniRef90_P33810.xml http://www.uniprot.org/uniparc/UPI000000001F

Provider: Uniprot | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Base URL: http://www.uniprot.org/ | 2 REST Endpoints
PASSED
picr REST Gb
Views 154 Favourites 0
aka getUPIForAccession
Annotations: 9 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 9 Total number of annotations sourced from other registries. 0
by Franck Tanoh (4 months ago)
Map accession numbers between databases. It will also retrieve the UPI(UniProt Archive (UniParc) identifier of the given accession number. Parameters: -accession - the accession to map [required] -version - the version of accession to map [optional] -database - the database to map to. At least one database is required, but multiple databases can be queried at once. -taxid - the NEWT taxon ID to limit the mappings [optional] -onlyactive - if true, only active mappings will be returned. If false, results may include deleted mappings. [optional, default is true] -includeattributes - if true, extra attributes such as sequence and taxon IDs will be returned if a...

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
Base URL: http://www.ebi.ac.uk/Tools/picr/ | 0 REST Endpoints
PASSED
WSCitationImplService SOAP Gb
Views 108 Favourites 0
aka CiteXplore
Annotations: 34 Total number of annotations from the provider's definition / description document. 6 Total number of annotations submitted by members of the BioCatalogue. 26 Total number of annotations sourced from other registries. 2
by Rodrigo Lopez (about 1 year ago)
CiteXplore combines literature search with text mining tools for biology. Search results are cross referenced to EBI applications based on publication identifiers. Links to full text versions are provided where available. Home: http://www.ebi.ac.uk/citexplore

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/webservices/citexplore/v1.0/service?wsdl | 2 SOAP Operations
PASSED
PromoSerSOAP SOAP Us
Views 59 Favourites 0
aka Promoter finder
Categories:
Annotations: 25 Total number of annotations from the provider's definition / description document. 15 Total number of annotations submitted by members of the BioCatalogue. 10 Total number of annotations sourced from other registries. 0
from provider's description doc (3 months ago)
A large-scale, batch service for promoter extraction
by Franck Tanoh (about 1 year ago)
Human, Mouse and Rat promoter extraction service. This service is operated using a job ticket model. Requests are submitted using 'submit_job', which returns immediately with a URL to a job ticket or an error if the inputs where incorrect. The actual result can be retrieved either in XML format or in simple FASTA format by accessing that URL. An "object not found" error indicates that the job was not found, probably because it is not ready. Please retry the request within at least 5 seconds for upto 3 minutes before giving up. The system will purge jobs after 24 hours. If the job causes an error during execution, the XML file will contain a description of the error and there will...

Provider: University of Boston (Center for Advanced Genomics Technology) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://biowulf.bu.edu/zlab/promoser/promoser.wsdl | 2 SOAP Operations
PASSED

Favourites (8)

DBFetch SOAP Gb
Views 795 Favourites 2
aka WSDbfetch (RPC/encoded SOAP) aka WSDbfetch (SOAP) aka WSDbfetch
Annotations: 126 Total number of annotations from the provider's definition / description document. 28 Total number of annotations submitted by members of the BioCatalogue. 98 Total number of annotations sourced from other registries. 0
by Franck Tanoh (9 months ago)
The service retrieves entries (sequences, literature abstract, protein structure information, etc) from various up-to-date biological databases using databases entry identifiers or accession numbers. Supported databases (complete list can be found on the web interface): EMBL, Ensembl, UniProt, UniRef, UniSave, RefSeq, Medline, PDB, InterPro, HGVbase, GenomeReviews, interPro. Web interface: http://www.ebi.ac.uk/cgi-bin/dbfetch
by Hamish McWilliam (3 months ago)
An equivalent document/literal SOAP interface to the service is also available (http://www.biocatalogue.org/services/2654).

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSDbfetch.wsdl | 7 SOAP Operations
PASSED

WSInterProScanService SOAP Gb
Views 301 Favourites 1
aka WSInterProScan aka InterProScan
Annotations: 72 Total number of annotations from the provider's definition / description document. 29 Total number of annotations submitted by members of the BioCatalogue. 41 Total number of annotations sourced from other registries. 2
by joecker (9 months ago)
InterProScan runs a lot of tools for protein domain prediction (against different databases). The results are mapped to InterPro identifiers to get additional information and identify same domains in different databases. Please note that not all protein domains are included in InterPro, but are in the result of InterProScan.
by joecker (9 months ago)
Please note that some tools in InterProScan use Hidden Markow Models and are therefore very slow.
by joecker (9 months ago)
The web service can be used in synchronous and asynchronous mode.
by Franck Tanoh (9 months ago)
InterPro is a database of protein families, domains, regions, repeats and sites in which identifiable features found in known proteins can be applied to new protein sequences. This service allows you to query your protein sequence or protein sequence identifier against InterPro. Home: http://www.ebi.ac.uk/Tools/InterProScan/

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl | 7 SOAP Operations
PASSED

EasyGene - Prediction of genes in prokaryotes SOAP Dk
Views 319 Favourites 1
aka EasyGene
Categories:
Annotations: 28 Total number of annotations from the provider's definition / description document. 1 Total number of annotations submitted by members of the BioCatalogue. 20 Total number of annotations sourced from other registries. 7
from provider's description doc (about 1 year ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. http://www.cbs.dtu.dk/services/EasyGene/ This service is fully asynchronous; the usage is split into the following three operations, which is usually executed in this order. Procedures and messages used are either common and shared ...
by Franck Tanoh (about 1 year ago)
Produces a list of predicted genes given a sequence of prokaryotic DNA. Interface: http://www.cbs.dtu.dk/services/EasyGene/
by kwolstencroft (about 1 year ago)
A gene prediction service for prokaryotic DNA
by rapacki (6 months ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. Alongside this Web Service EasyGene method is also implemented as an interactive server at: http://www.cbs.dtu.dk/services/EasyGene/

Provider: Center for Biological Sequence Analysis (CBS) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.cbs.dtu.dk/ws/EasyGene/EasyGene_1_2a_ws0.wsdl | 3 SOAP Operations
PASSED

KEGG SOAP Jp
Views 547 Favourites 2
Annotations: 1283 Total number of annotations from the provider's definition / description document. 192 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 1076
by Franck Tanoh (about 1 year ago)
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database of biological systems, consisting of genetic building blocks of genes and proteins (KEGG GENES), chemical building blocks of both endogenous and exogenous substances (KEGG LIGAND), molecular wiring diagrams of interaction and reaction networks (KEGG PATHWAY), and hierarchies and relationships of various biological objects (KEGG BRITE). KEGG provides a reference knowledge base for linking genomes to biological systems and also to environments by the processes of PATHWAY mapping and BRITE mapping. This service allows you to access or retrieve data (genes, pathways, enzyme, drugs, etc) from KEGG. KEGG home page: http://www.g...

Provider: KEGG | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://soap.genome.jp/KEGG.wsdl | 72 SOAP Operations
PASSED

AccessionMapper(PICR) SOAP Gb
Views 184 Favourites 1
aka PICR
Annotations: 28 Total number of annotations from the provider's definition / description document. 9 Total number of annotations submitted by members of the BioCatalogue. 19 Total number of annotations sourced from other registries. 0
by Rodrigo Lopez (about 1 year ago)
Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge. This is a common problem when attempting to unify datasets that have been annotated with proteins from multiple data sources or querying data providers with one flavour of protein identifiers when the source database uses another. The Protein Identifier Cross-Reference (PICR) service is a web application that provides interactive and programmatic (SOAP and REST) access to a mapping algorithm that uses the UniProt Archive (UniParc) as a data warehouse to offer protein cross-references base...

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/picr/service?wsdl | 3 SOAP Operations
PASSED

MINT PSICQUIC Service REST It
Views 121 Favourites 1
aka http://code.google.com/p/psicquic/wiki/RestAccess
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by brunoaranda (9 months ago)
PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. This specific implementation provides remote access to the MINT database.

Provider: Protemics Standard Initiative Common Query InterfaCe (PSICQUIC) | Submitter / Source: brunoaranda (9 months ago)

Tags on this service:
Base URL: http://mint.bio.uniroma2.it/mint/psicquic/webservices/current/search/version | 0 REST Endpoints
WARNING

TFmodeller SOAP Mx
Views 128 Favourites 1
Annotations: 30 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 12
by Franck Tanoh (about 1 year ago)
The TFmodeller program scans a protein sequence P against a library of protein-DNA complexes and builds comparative models of P if good templates are found. These models are used to get an idea of the P-DNA interface, its evolution and the putative recognised DNA sequences.

Provider: University of Mexico (Center for Genomic Sciences of the National Autonomous) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://maya.ccg.unam.mx:8080/axis/TFmodellerService.jws?WSDL | 1 SOAP Operation
PASSED

Database of Protein Subcellular Localization Service SOAP Cn
Views 154 Favourites 1
Annotations: 99 Total number of annotations from the provider's definition / description document. 23 Total number of annotations submitted by members of the BioCatalogue. 76 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
Retrieves information from the database of protein subcellular localization (DBSubLoc). This database contains proteins from primary protein database such as SWISS-PROT and PIR. By collecting the subcellular localization annotation, these information are classified and categorized by cross referencs to taxonomies and Gene Ontology database.

Provider: Institute of Bioinformatics, Tsinghua University | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.bioinfo.tsinghua.edu.cn/~tigerchen/SubLoc.wsdl | 7 SOAP Operations
PASSED