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Member of the BioCatalogue Franck Tanoh


Profile

Display Name:
Franck Tanoh

Email address:
ytanoh [at] cs.man.ac.uk

Affiliation:
University of Manchester

Country:
United Kingdom

Services Submitted (106)

TFmodeller SOAP Mx
Views 128 Favourites 1
Annotations: 30 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 12
by Franck Tanoh (about 1 year ago)
The TFmodeller program scans a protein sequence P against a library of protein-DNA complexes and builds comparative models of P if good templates are found. These models are used to get an idea of the P-DNA interface, its evolution and the putative recognised DNA sequences.

Provider: University of Mexico (Center for Genomic Sciences of the National Autonomous) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://maya.ccg.unam.mx:8080/axis/TFmodellerService.jws?WSDL | 1 SOAP Operation
PASSED
PhylipService SOAP Us
Views 116 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

PimllinkService SOAP Us
Views 77 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

PimlService SOAP Us
Views 82 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

PathwayService SOAP Us
Views 91 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

GenometoolService SOAP Us
Views 88 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

EmbldasService SOAP Us
Views 26 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

VbidasService SOAP Us
Views 25 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

GOMinerWS SOAP Us
Views 44 Favourites 0
Categories:
Annotations: 9 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by Franck Tanoh (2 months ago)
GoMiner is a tool for biological interpretation of 'omic' data – including data from gene expression microarrays. It leverages the Gene Ontology (GO) to identify the biological processes, functions and components. Website: http://discover.nci.nih.gov/gominer

Provider: National Cancer Institute (NCI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
none
WSDL Location: http://discover.nci.nih.gov/gominer/xfire/GMService?wsdl | 1 SOAP Operation
PASSED
GashApiService SOAP Jp
Views 33 Favourites 0
Annotations: 23 Total number of annotations from the provider's definition / description document. 10 Total number of annotations submitted by members of the BioCatalogue. 13 Total number of annotations sourced from other registries. 0
by Franck Tanoh (3 months ago)
GASH (Genetic-algorithm ASH[Alignment of Structural Homologs]) generates very accurate alignments in about twice the time as RASH (Rapid ASH). GASH is the best choice if the structures are only partially similar or if multiple solutions are required.

Provider: Protein Data Bank Japan (PDBj) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://pdbjs3.protein.osaka-u.ac.jp/gash/soap/gash.wsdl | 3 SOAP Operations
PASSED

Other Services Responsible For (0)

Services Annotated (333)

XindiceService SOAP Us
Views 60 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

WsfinderService SOAP Us
Views 63 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

BlastbtgtService SOAP Us
Views 63 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

EstapService SOAP Us
Views 72 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

ManovaService SOAP Us
Views 58 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

RpcaService SOAP Us
Views 45 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

AnovaService SOAP Us
Views 44 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

MicroarrayService SOAP Us
Views 56 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

MulttestService SOAP Us
Views 53 Favourites 0

This service has been archived because it may not be active anymore (or is close to being non active).

getNASCArraysReferenceNumberByExperimentNameService SOAP Gb
Views 46 Favourites 0
Annotations: 7 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 2 Total number of annotations sourced from other registries. 2
from provider's description doc (3 months ago)
Authority: arabidopsis.info - Retrieves the NASCArrays reference number for a given NASCArrays experiment name from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Baseline experiment floral homeotics'.

Provider: University of Nottingham | Submitter / Source: SeekDa (about 1 year ago)

Tags on this service:
WSDL Location: http://biomoby.org/services/wsdl/arabidopsis.info/getNASCArraysReferenceNumberByExperimentName | 1 SOAP Operation
PASSED

Favourites (8)

DBFetch SOAP Gb
Views 796 Favourites 2
aka WSDbfetch (RPC/encoded SOAP) aka WSDbfetch (SOAP) aka WSDbfetch
Annotations: 126 Total number of annotations from the provider's definition / description document. 28 Total number of annotations submitted by members of the BioCatalogue. 98 Total number of annotations sourced from other registries. 0
by Franck Tanoh (9 months ago)
The service retrieves entries (sequences, literature abstract, protein structure information, etc) from various up-to-date biological databases using databases entry identifiers or accession numbers. Supported databases (complete list can be found on the web interface): EMBL, Ensembl, UniProt, UniRef, UniSave, RefSeq, Medline, PDB, InterPro, HGVbase, GenomeReviews, interPro. Web interface: http://www.ebi.ac.uk/cgi-bin/dbfetch
by Hamish McWilliam (3 months ago)
An equivalent document/literal SOAP interface to the service is also available (http://www.biocatalogue.org/services/2654).

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSDbfetch.wsdl | 7 SOAP Operations
PASSED

WSInterProScanService SOAP Gb
Views 309 Favourites 1
aka WSInterProScan aka InterProScan
Annotations: 72 Total number of annotations from the provider's definition / description document. 29 Total number of annotations submitted by members of the BioCatalogue. 41 Total number of annotations sourced from other registries. 2
by joecker (9 months ago)
InterProScan runs a lot of tools for protein domain prediction (against different databases). The results are mapped to InterPro identifiers to get additional information and identify same domains in different databases. Please note that not all protein domains are included in InterPro, but are in the result of InterProScan.
by joecker (9 months ago)
Please note that some tools in InterProScan use Hidden Markow Models and are therefore very slow.
by joecker (9 months ago)
The web service can be used in synchronous and asynchronous mode.
by Franck Tanoh (9 months ago)
InterPro is a database of protein families, domains, regions, repeats and sites in which identifiable features found in known proteins can be applied to new protein sequences. This service allows you to query your protein sequence or protein sequence identifier against InterPro. Home: http://www.ebi.ac.uk/Tools/InterProScan/

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Rodrigo LopezGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl | 7 SOAP Operations
PASSED

EasyGene - Prediction of genes in prokaryotes SOAP Dk
Views 324 Favourites 1
aka EasyGene
Categories:
Annotations: 28 Total number of annotations from the provider's definition / description document. 1 Total number of annotations submitted by members of the BioCatalogue. 20 Total number of annotations sourced from other registries. 7
from provider's description doc (about 1 year ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. http://www.cbs.dtu.dk/services/EasyGene/ This service is fully asynchronous; the usage is split into the following three operations, which is usually executed in this order. Procedures and messages used are either common and shared ...
by Franck Tanoh (about 1 year ago)
Produces a list of predicted genes given a sequence of prokaryotic DNA. Interface: http://www.cbs.dtu.dk/services/EasyGene/
by kwolstencroft (about 1 year ago)
A gene prediction service for prokaryotic DNA
by rapacki (6 months ago)
The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. The user needs only to specify the organism hosting the query sequence. Two more parameters (start codon leniency and R-value cutoff) have default values which may be altered if needed. Alongside this Web Service EasyGene method is also implemented as an interactive server at: http://www.cbs.dtu.dk/services/EasyGene/

Provider: Center for Biological Sequence Analysis (CBS) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.cbs.dtu.dk/ws/EasyGene/EasyGene_1_2a_ws0.wsdl | 3 SOAP Operations
PASSED

KEGG SOAP Jp
Views 548 Favourites 2
Annotations: 1283 Total number of annotations from the provider's definition / description document. 192 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 1076
by Franck Tanoh (about 1 year ago)
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database of biological systems, consisting of genetic building blocks of genes and proteins (KEGG GENES), chemical building blocks of both endogenous and exogenous substances (KEGG LIGAND), molecular wiring diagrams of interaction and reaction networks (KEGG PATHWAY), and hierarchies and relationships of various biological objects (KEGG BRITE). KEGG provides a reference knowledge base for linking genomes to biological systems and also to environments by the processes of PATHWAY mapping and BRITE mapping. This service allows you to access or retrieve data (genes, pathways, enzyme, drugs, etc) from KEGG. KEGG home page: http://www.g...

Provider: KEGG | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://soap.genome.jp/KEGG.wsdl | 72 SOAP Operations
PASSED

AccessionMapper(PICR) SOAP Gb
Views 184 Favourites 1
aka PICR
Annotations: 28 Total number of annotations from the provider's definition / description document. 9 Total number of annotations submitted by members of the BioCatalogue. 19 Total number of annotations sourced from other registries. 0
by Rodrigo Lopez (about 1 year ago)
Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge. This is a common problem when attempting to unify datasets that have been annotated with proteins from multiple data sources or querying data providers with one flavour of protein identifiers when the source database uses another. The Protein Identifier Cross-Reference (PICR) service is a web application that provides interactive and programmatic (SOAP and REST) access to a mapping algorithm that uses the UniProt Archive (UniParc) as a data warehouse to offer protein cross-references base...

Provider: European Bioinformatics Institute (EBI) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.ebi.ac.uk/Tools/picr/service?wsdl | 3 SOAP Operations
PASSED

MINT PSICQUIC Service REST It
Views 123 Favourites 1
aka http://code.google.com/p/psicquic/wiki/RestAccess
Annotations: 6 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of the BioCatalogue. 6 Total number of annotations sourced from other registries. 0
by brunoaranda (10 months ago)
PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. This specific implementation provides remote access to the MINT database.

Provider: Protemics Standard Initiative Common Query InterfaCe (PSICQUIC) | Submitter / Source: brunoaranda (10 months ago)

Tags on this service:
Base URL: http://mint.bio.uniroma2.it/mint/psicquic/webservices/current/search/version | 0 REST Endpoints
PASSED

TFmodeller SOAP Mx
Views 128 Favourites 1
Annotations: 30 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of the BioCatalogue. 15 Total number of annotations sourced from other registries. 12
by Franck Tanoh (about 1 year ago)
The TFmodeller program scans a protein sequence P against a library of protein-DNA complexes and builds comparative models of P if good templates are found. These models are used to get an idea of the P-DNA interface, its evolution and the putative recognised DNA sequences.

Provider: University of Mexico (Center for Genomic Sciences of the National Autonomous) | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://maya.ccg.unam.mx:8080/axis/TFmodellerService.jws?WSDL | 1 SOAP Operation
PASSED

Database of Protein Subcellular Localization Service SOAP Cn
Views 154 Favourites 1
Annotations: 99 Total number of annotations from the provider's definition / description document. 23 Total number of annotations submitted by members of the BioCatalogue. 76 Total number of annotations sourced from other registries. 0
by Franck Tanoh (about 1 year ago)
Retrieves information from the database of protein subcellular localization (DBSubLoc). This database contains proteins from primary protein database such as SWISS-PROT and PIR. By collecting the subcellular localization annotation, these information are classified and categorized by cross referencs to taxonomies and Gene Ontology database.

Provider: Institute of Bioinformatics, Tsinghua University | Submitter / Source: Franck TanohGb (about 1 year ago)

Tags on this service:
WSDL Location: http://www.bioinfo.tsinghua.edu.cn/~tigerchen/SubLoc.wsdl | 7 SOAP Operations
PASSED