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The Europe PMC RESTful Web Service gives you access to all of the publications and related information held in the Europe PMC database, which includes the following: 1. Over 30 million publications from various sources, including PubMed, AGRICOLA, and the European Patent Office. 2. Provision of the full text article free for more than 3 million of these publications, of which more than 900,000 are open access. 3. Database cross-references to a number of databases, including UniProt, the …
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/europepmc/webservices/rest
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This web service gives programmatic access to all of the publications and related information in Europe PubMed Central (Europe PMC). The following is included: 1. Over 30 million abstracts from CiteXplore, including PubMed, Agricola, and international Patents from the European Patent Office. Section 3 provides background information about the data sources. 2. Over 3 million full text articles from PubMed Central, of which 900 thousand are open access. 3. Database crosslinks to a numbe…
Provider: European Bioinformatics Institute (EMBL-EBI) WSDL Location: http://www.ebi.ac.uk/europepmc/webservices/soap?wsdl
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EMBOSS backtranambig reads a protein sequence and writes the nucleic acid sequence it could have come from. It does this by using nucleotide ambiguity codes that represent all possible codons for each amino acid.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_backtranambig
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EMBOSS backtranseq reads a protein sequence and writes the nucleic acid sequence it is most likely to have come from.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_backtranseq
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EMBOSS sixpack reads a DNA sequence and outputs the three forward and (optionally) three reverse translations in a visual manner.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_sixpack
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EMBOSS transeq translates nucleic acid sequences to their corresponding peptide sequences. It can translate to the three forward and three reverse frames, and output multiple frame translations at once.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_transeq
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SAPS (Statistical Analysis of Protein Sequences) evaluates a wide variety of protein sequence properties using statistics.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/saps
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EMBOSS pepwindow draws a hydropathy plot for a protein sequence.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_pepwindow
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EMBOSS pepstats calculates statistics for a protein such as molecular weight and isoelectric point.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_pepstats
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EMBOSS isochore plots GC content in windows over a DNA sequence.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_isochore
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EMBOSS cpgplot identifies CpG islands in nucleotide sequences.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_cpgplot
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Readseq reads and converts biosequences between a selection of common biological sequence formats, including EMBL, GenBank and fasta sequence formats.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/readseq
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EMBOSS seqret reads and writes (returns) sequences. It is useful for a variety of tasks, including extracting sequences from databases, displaying sequences, reformatting sequences, producing the reverse complement of a sequence, extracting fragments of a sequence, sequence case conversion or any combination of the above functions.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_seqret
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MapMi is a tool for mapping and analysis of miRNA sequences. It is designed to locate miRNA precursor sequences in existing genomic sequences (e.g Ensembl and Ensembl Metazoa), using potential mature miRNA sequences as input. After searching the genome for the provided mature sequences, these hits are extended and classified taking into account major structural properties of known miRNA precursors.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/mapmi
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Infernal cmscan is used to search the CM-format Rfam database.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/infernal_cmscan
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The Wise2 DNA Block Aligner (DBA) aligns two DNA sequences using the assumption that the sequences share a number of colinear blocks of conservation separated by potentially large and varied lengths of DNA in the two sequences.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/wise2dba
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PromoterWise compares two DNA sequences allowing for inversions and translocations, ideal for promoters.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/promoterwise
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GeneWise compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/genewise
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Clustal Omega is a multiple sequence alignment program for protein sequences.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/clustalo
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RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats.
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/radar
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PROSITE Scan compares a protein sequence against the signatures in PROSITE
Provider: European Bioinformatics Institute (EMBL-EBI) Base URL: http://www.ebi.ac.uk/Tools/services/rest/ps_scan