Bergen Center for Computational Science

EchoService SOAP
Categories:
PASSED
This WSDL file describes a simple Echo Service that echoes a string sendt to it. This service is intended primarily for testing purposes.

Provider: Bergen Center for Computational Science | WSDL Location: http://api.bioinfo.no/wsdl/EchoService.wsdl

LiftOver SOAP
PASSED
This tool converts genome coordinates and genome annotation files between assemblies.

Provider: Bergen Center for Computational Science | WSDL Location: http://api.bioinfo.no/wsdl/LiftOverService.wsdl

Jaspar_service SOAP
PASSED
This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites. Profiles can be fetched as Position Frequency Matrices (PFM), Position Weight Matrices (PWM), or Information Content Matrices (ICM). JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Sandelin A, Alkema W, Engstrom P, Wasserman WW, Lenhard B. PMID: 14681366 http://jaspar.genereg.net/ 0.2 (beta service)

Provider: Bergen Center for Computational Science | WSDL Location: http://api.bioinfo.no/wsdl/Jaspar_webservice_0.2.wsdl

ELMdb SOAP
PASSED
This is a Web service interface to the ELM database. The ELM database contains descriptions of functional sites, representations of functional sites (ELMs) and known instances of ELMs (ELMInstances).

Provider: Bergen Center for Computational Science | WSDL Location: http://api.bioinfo.no/wsdl/ELMdb.wsdl

ELMInstanceMapper SOAP
PASSED
This WSDL file describe the ELM Instance Mapper Web Service. It compares a query protein sequence with sequences known to contain ELM Instances.

Provider: Bergen Center for Computational Science | WSDL Location: http://api.bioinfo.no/wsdl/ELMInstanceMapper.wsdl

ELMMatcher SOAP No
PASSED
This service performs the basic mapping of ELM motifs to a query sequence. The service returns all matching ELMs to a query sequence. Note that this is not a complete prediction of functional site. Extensive filtering of the resulting list of ELMs will be necessary.

Provider: Bergen Center for Computational Science | WSDL Location: http://api.bioinfo.no/wsdl/ELMMatcher.wsdl

Jaspar SOAP
Categories:
PASSED
This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites. Profiles can be fetched as Position Frequency Matrices (PFM), Position Weight Matrices (PWM), or Information Content Matrices (ICM).

Provider: Bergen Center for Computational Science | WSDL Location: http://api.bioinfo.no/wsdl/JasparDB.wsdl