PRABI – Rhone-Alpes Bioinformatics Center

Displaying all 9 services

Hogenom SOAP

PASSED
All tests were successful for this service
Last checked: today about 21 hours ago

HOGENOM is a database of homologous genes from fully sequenced organisms, structured under ACNUC sequence database management system. It allows to select sets of homologous genes among species,

Provider: PRABI – Rhone-Alpes Bioinformatics Center WSDL Location: http://prodom.prabi.fr/prodom/2006.1/wsdl/hogenom.wsdl

MkDom2 SOAP Domains

WARNING
Some or all of the tests for this service did not succeed

• Could not access endpoint .

Last checked: today about 21 hours ago

MkDom2 is the program used routinely to build each new release of ProDom. The algorithm relies on the assumption that the shortest amino acid sequence corresponds to a single domain, and may be used as a query to scree

Provider: PRABI – Rhone-Alpes Bioinformatics Center WSDL Location: http://prodom.prabi.fr/prodom/current/wsdl/essairunmkdom.wsdl

ProDomCG_evoscen SOAP Data Retrieval

WARNING
Some or all of the tests for this service did not succeed

• Could not access endpoint .

Last checked: today about 21 hours ago

ProdomCG_evoscen is a set of webservices allowing to browse ProDom-CG267 evolutionary scenarios. It includes

• GetScenarioProdom : takes an ProDom-CG family (CG + 6 characters) and returns its evolutionary scenario as a string of (number of nodes)
  Provider: PRABI – Rhone-Alpes Bioinformatics Center WSDL Location: http://prodom.prabi.fr/prodom/2006.1/wsdl/prodomCG_evoscen.wsdl

  ProDomCG_tree SOAP

• Phylogeny
• Data Retrieval

PASSED
All tests were successful for this service
Last checked: today about 21 hours ago

ProdomCG_tree is a set of webservices allowing to browse ProDom-CG267 phylogenetic tree. It includes

• NearestNodeProdom : takes an NCBI taxID and returns the closest taxID present in ProdomCG
• GetParentProdom : takes a taxID present in Pr
  Provider: PRABI – Rhone-Alpes Bioinformatics Center WSDL Location: http://prodom.prabi.fr/prodom/2006.1/wsdl/prodomCG_tree.wsdl

  Hogenom_evoscen SOAP

WARNING
Some or all of the tests for this service did not succeed

• Could not access endpoint .

Last checked: today about 21 hours ago

Hogenom_evoscen is a set of webservices allowing to browse Hogenom 4 evolutionary scenarios. It includes

• GetScenarioHogenom : takes an Hogenom family (HBG + 6 digits) and returns its evolutionary scenario as a string of (number of nodes) charact
  Provider: PRABI – Rhone-Alpes Bioinformatics Center WSDL Location: http://prodom.prabi.fr/prodom/2006.1/wsdl/hogenom_evoscen.wsdl

  Hogenom_tree SOAP

• Phylogeny

WARNING
Some or all of the tests for this service did not succeed

• Could not access endpoint .

Last checked: today about 21 hours ago

Hogenom_tree is a set of webservices allowing to browse Hogenom 4 phylogenetic tree. It includes

• NearestNodeHogenom : takes an NCBI taxID and returns the closest taxID present in Hogenom
• GetParentHogenom : takes a taxID present
  Provider: PRABI – Rhone-Alpes Bioinformatics Center WSDL Location: http://prodom.prabi.fr/prodom/current/wsdl/hogenom_tree.wsdl

  Hogenom SOAP

WARNING
Some or all of the tests for this service did not succeed

• Could not access endpoint .

Last checked: today about 22 hours ago

HOGENOM (Database of Complete Genome Homologous Genes Families) home page: http://pbil.univ-lyon1.fr/databases/hogenom.php

Provider: PRABI – Rhone-Alpes Bioinformatics Center WSDL Location: http://prodom.prabi.fr/prodom/current/wsdl/hogenom.wsdl

blastprodom SOAP

WARNING
Some or all of the tests for this service did not succeed

• Could not access endpoint .

Last checked: today about 22 hours ago

Performs a recursive psi-blast against the ProDom database. ProDom database website: http://prodom.prabi.fr/prodom/current/html/home.php

Provider: PRABI – Rhone-Alpes Bioinformatics Center WSDL Location: http://prodom.prabi.fr/prodom/current/wsdl/blastprodom.wsdl

blastProDom SOAP Nucleotide Sequence Similarity

WARNING
Some or all of the tests for this service did not succeed

• Could not access endpoint .

Last checked: today about 22 hours ago

Executes blast on a blast (blastn or blastp) on ProDom database (protein domain database). ProDom database home page: http://prodom.prabi.fr/prodom/current/html/home.php

Provider: PRABI – Rhone-Alpes Bioinformatics Center WSDL Location: http://prodom.prabi.fr/prodom/current/wsdl/blastliteral.wsdl