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University of Wageningen
SeekDa (over 11 years ago)
http://biomoby.org/services/wsdl/www.bioinformatics.nl/OligoAnnotationAnalyser(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) * Calculates whether a hit is capable of generating signal in an array expermiment based on criteria specified in an OligoQualityThresholds object. * Only hits capable of generating signal are retained. Other hits are dropped. * Fetches cross references to entries in several databases and adds these as a CrossReference block: * DNA Align Features, Protein Align Features and Xrefs from Ensembl that align with high identity to the sequence region of the OligoHit are retrieved by default and added as expression_xref. * Optionally GO terms linked to EntrezGene accessions or Ensembl genes can be retrieved and added as annotation_xref. * Optionally several types of homologs from several model species can be retrieved from Ensembl and added as homology_xref. * Checks for introns and merges hits if they were intron seperated. (Only for hits on the genome.)
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