Web Service OligoAnnotationAnalyser_submitService SOAP Nl

Cog_error Archived / Deprecated

This service has been archived because it may not be active anymore (or is close to being non active). Please do not use it as it may not be accessible.

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Annotations: 6 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of BioCatalogue. 0 Total number of annotations sourced from other registries. 3


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University of Wageningen

Netherlands Nl

SeekDa (over 11 years ago)

Base URL:

WSDL Location:
http://biomoby.org/services/wsdl/www.bioinformatics.nl/OligoAnnotationAnalyser_submit (download last cached WSDL file)

Documentation URL(s):
from provider's description doc (over 10 years ago)
* Calculates whether a hit is capable of generating signal in an array expermiment based on criteria
  specified in an OligoQualityThresholds object. 
* Only hits capable of generating signal are retained. Other hits are dropped.
* Fetches cross references to entries in several databases and adds these as a CrossReference block:
	* DNA Align Features, Protein Align Features and Xrefs from Ensembl that align with high identity to the 
	  sequence region of the OligoHit are retrieved by default and added as expression_xref.
	* Optionally GO terms linked to EntrezGene accessions or Ensembl genes can be retrieved 
	  and added as annotation_xref.
	* Optionally several types of homologs from several model species can be retrieved from Ensembl 
	  and added as homology_xref.
* Checks for introns and merges hits if they were intron seperated. (Only for hits on the genome.)
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