Web Service RSATWebServices SOAP Mx

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Annotations: 114 Total number of annotations from the provider's definition / description document. 101 Total number of annotations submitted by members of BioCatalogue. 8 Total number of annotations sourced from other registries. 5

SOAP Operations (50)

These are the SOAP operations available for the SOAP variant of this service. Click on each one to get more information and to annotate.

alter_graph

1 input | 1 output

Part of Service: RSATWebServices

Alter a graph either by adding or removing edges or nodes
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none

classfreq

1 input | 1 output

Part of Service: RSATWebServices

This script takes a group of numbers (real or integers) and outputs their distribution among classes.
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none

compare_classes

1 input | 1 output

Part of Service: RSATWebServices

Compare two class files(the query file and the reference file). Each class of the query file is compared to each class of the reference file. The n...
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none

compare_graphs

1 input | 1 output

Part of Service: RSATWebServices

Computes the union / difference or intersection of two graphs
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none

compare_matrices

1 input | 1 output

Part of Service: RSATWebServices

Compare two collections of position-specific scoring matrices (PSSM), and return various similarity statistics + matrix alignments (pairwise, one-t...
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none

contingency_stats

1 input | 1 output

Part of Service: RSATWebServices

This programs takes as input a contingency table, and calculates various matching statistics between the rows and columns. The description of t...
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none

contingency_table

1 input | 1 output

Part of Service: RSATWebServices

Create a contingency table from a two-column file.
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convert_classes

1 input | 1 output

Part of Service: RSATWebServices

Interconversions between different formats of cluster files.
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convert_features

1 input | 1 output

Part of Service: RSATWebServices

Interconversions between various formats of feature description.
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convert_graph

1 input | 1 output

Part of Service: RSATWebServices

Convert graphs between different formats
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none

convert_matrix

1 input | 1 output

Part of Service: RSATWebServices

Performs inter-conversions between various formats of position-specific scoring matrices (PSSM). The program also performs a statistical analysis o...
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none

convert_seq

1 input | 1 output

Part of Service: RSATWebServices

Converts a sequence between two formats (e.g. fasta -> raw).
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none

display_graph

1 input | 1 output

Part of Service: RSATWebServices

Produces the figure of a graph
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none

dna_pattern

1 input | 1 output

Part of Service: RSATWebServices

Searches all occurrences of a pattern within DNA sequences.
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none

draw_heatmap

1 input | 1 output

Part of Service: RSATWebServices

Produces the figure of a heatmap
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none

dyad_analysis

1 input | 1 output

Part of Service: RSATWebServices

Analysis of the statistical significance of all the spaced dyads of a given size in a sequence. Commonly used to detect over-represented spaced dya...
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none

feature_map

1 input | 1 output

Part of Service: RSATWebServices

Draws a graphical map of features (e.g. results of pattern matching) in a set of sequences.
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none

fetch_sequences

1 input | 1 output

Part of Service: RSATWebServices

Returns DNA sequences for list of coordinates in BED format.
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none

footprint_discovery

1 input | 1 output

Part of Service: RSATWebServices

Detect phylogenetic footprints by applying dyad-analysis in promoters of a set of orthologous genes.
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gene_info

1 input | 1 output

Part of Service: RSATWebServices

Get information about genes.
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none

get_orthologs

1 input | 1 output

Part of Service: RSATWebServices

Get orthologuous genes.
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get_result

1 input | 1 output

Part of Service: RSATWebServices

Get result of a job
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none

graph_cliques

1 input | 1 output

Part of Service: RSATWebServices

Find all cliques in a graph
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none

graph_cluster_membership

1 input | 1 output

Part of Service: RSATWebServices

Map a clustering result onto a graph, and compute the membership degree between each node and each cluster, on the basis of egdes linking this node...
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none

graph_get_clusters

1 input | 1 output

Part of Service: RSATWebServices

Compares a graph with a classification/clustering file.
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none

graph_neighbours

1 input | 1 output

Part of Service: RSATWebServices

Find the neihbours up to a certain distance of a collection of seed nodes
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none

graph_node_degree

1 input | 1 output

Part of Service: RSATWebServices

Calculates the in / out / global degree for a selection of seed nodes
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none

graph_topology

1 input | 1 output

Part of Service: RSATWebServices

Calculate the node degree, the closeness and the betweenness of each node and specifies if this node is a seed or a target node.
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infer_operon

1 input | 1 output

Part of Service: RSATWebServices

Infer operon.
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matrix_distrib

1 input | 1 output

Part of Service: RSATWebServices

Returns the theoretical distribution of matrix weight within the defined background model.
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none

matrix_scan

1 input | 1 output

Part of Service: RSATWebServices

Scan sequences with one or several position-specific scoring matrices (PSSM) to identify instances of the corresponding motifs(putative sites). Thi...
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mcl

1 input | 1 output

Part of Service: RSATWebServices

Clustering via Stijn van Dongen MCL algorithm
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monitor

1 input | 1 output

Part of Service: RSATWebServices

Monitoring the status of a job
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none

oligo_analysis

1 input | 1 output

Part of Service: RSATWebServices

Analysis of the statistical significance of all the oligomers of a given size in a sequence. Commonly used to detect over-represented oligonucleoti...
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none

oligo_diff

1 input | 1 output

Part of Service: RSATWebServices

Compare oligonucleotide occurrences between two input sequence files (test and control), and return oligos that are significantly enriched in one o...
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none

parse_psi_xml

1 input | 1 output

Part of Service: RSATWebServices

Converts a psi xml file in a tab delimited file
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none

pattern_assembly

1 input | 1 output

Part of Service: RSATWebServices

Assemble a set of oligonucleotides or dyads into groups of overlapping patterns (assemblies).
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none

peak_motifs

1 input | 1 output

Part of Service: RSATWebServices

Pipeline for discovering motifs from ChIP-seq (or ChIP-chip) peak sequences.
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none

position_analysis

1 input | 1 output

Part of Service: RSATWebServices

Calculates the positional distribution of oligonucleotides in a set of sequences, and detects those which significantly discard from a homogeneous ...
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none

purge_seq

1 input | 1 output

Part of Service: RSATWebServices

Mask repeated fragments of an input sequence.
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none

random_graph

1 input | 1 output

Part of Service: RSATWebServices

Generate random graphs either from scratch of from an existing graph using different randomization models
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none

random_seq

1 input | 1 output

Part of Service: RSATWebServices

Generates random sequences.
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retrieve_ensembl_seq

1 input | 1 output

Part of Service: RSATWebServices

Returns upstream, downstream or coding DNA sequences for list of query genes (in EnsEMBL database).
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retrieve_seq

1 input | 1 output

Part of Service: RSATWebServices

Returns upstream, downstream or coding DNA sequences for list of query genes.
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retrieve_seq_multigenome

1 input | 1 output

Part of Service: RSATWebServices

Returns upstream, downstream or coding DNA sequencesfor list of query genes and organisms.
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rnsc

1 input | 1 output

Part of Service: RSATWebServices

Clustering via Andrew King RNSC algorithm
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roc_stats

1 input | 1 output

Part of Service: RSATWebServices

Computes, from a set of scored results associated with validation labels, the derived statistics (Sn, PPV, FPR), which can be further used to draw ...
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supported_organisms

1 input | 1 output

Part of Service: RSATWebServices

List RSAT suppported organisms.
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text_to_html

1 input | 1 output

Part of Service: RSATWebServices

Converts a tab-delimited file into a HTML table
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xygraph

1 input | 1 output

Part of Service: RSATWebServices

Plot a graph and export it.
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none

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Archived Operations (0) Info