Web Service getGermplasmByPhenotypeService SOAP Ph

Cog_error Archived / Deprecated

This service has been archived because it may not be active anymore (or is close to being non active). Please do not use it as it may not be accessible.

No alternative names Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
UNCHECKED
Annotations: 5 Total number of annotations from the provider's definition / description document. 3 Total number of annotations submitted by members of BioCatalogue. 0 Total number of annotations sourced from other registries. 2

Overview

This looks like a BioMoby service. We are working on providing better support and documentation for BioMoby services.
Click here for more info and guidance on how to use this service Expand

Provider:
International Rice Information System (IRIS)

Location:
Los Banos, Philippines Ph

Submitter/Source:
SeekDa (over 11 years ago)

Base URL:
http://202.123.56.214:8081/MOBYrice3/services/getGermplasmByPhenotype

WSDL Location:
http://biomoby.org/services/wsdl/www.iris.irri.org/getGermplasmByPhenotype (download last cached WSDL file)

Documentation URL(s):
None
Description(s):
from provider's description doc (over 10 years ago)

phenotype, or combination of phenotypes.

The returned germplasm objects are very limited - containing just the identity attributes (simple identifiers). There are other use cases (and services implementing them) that can use these identifiers and retrieve full germplasm records.

A phenotype (used as a search filter) is defined by the GCP Domain model as a specialized Feature that contains two concepts, a “Trait” and a “TraitValue”. Both these concepts are defined by their own ontology. The Trait concept is specified as a SimpleOntologyTerm in the type of the phenotype. The TraitValue is specified as a string value of this Phenotype (later use cases may extend this to support more complex values). The above means that for this use case a Phenotype can be represented as a SimpleFeature (and not a full Feature).

For example, a phenotype we are looking for can be “Leaf color is purple”. The “Leaf color” is a term from a controlled vocabulary (ontology) of Traits, and the “purple” is a term from a controlled vocabulary of TraitValues (colors, in this case). The expected Phenotype object for such query will be:

i) getType() returning a type with ID “urn:lsid:…..:XXXXX:..”

where XXXXX is a unique identifier of the term “leaf color” in some ontology (the name of which is also part of the same LSID),

ii) getValueString() returning “purple”

where the string “purple” sits here without any knowledge where it should be looked for (the implementation must guess what would be the reasonable places - tables - to look at)..

ELIXIR Description(s): Info
No info yet
License(s): Info
No info yet
Cost: Info
No info yet
Usage conditions: Info
No info yet
Contact info: Info
No info yet
How to cite this service: Info
No info yet
Publications about this service: Info
No info yet
Citations of this service: Info
No info yet

Info Members Responsible for this Service (0)

No one

Info Favourited By (0)

No one

Info Similar Services (0)

None