Web Service WSNetGlycate_1_0 SOAP

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This service has been archived because it may not be active anymore (or is close to being non active). Please do not use it as it may not be accessible.

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Annotations: 11 Total number of annotations from the provider's definition / description document. 1 Total number of annotations submitted by members of BioCatalogue. 7 Total number of annotations sourced from other registries. 3

Overview

Provider:
Center for Biological Sequence Analysis (CBS)

Location:
European Union

Submitter/Source:
The EMBRACE Registry (over 11 years ago)

Base URL:
http://ws.cbs.dtu.dk/cgi-bin/soap/ws/simple.cgi

WSDL Location:
http://www.cbs.dtu.dk/ws/NetGlycate/NetGlycate_1_0.wsdl (download last cached WSDL file)

Description(s):
from provider's description doc (over 11 years ago)
		INTRODUCTION

		This Web Service implements NetGlycate 1.0. It predicts glycation of
		Epsilon amino groups of lysines in mammalian proteins. The method
		is described in detail in the following article:

		Analysis and prediction of mammalian protein glycation.
		Morten Bo Johansen, Lars Kiemer and Soren Brunak
		Glycobiology, 16:844-853, 2006.

		Alongside this Web Service the NetGlycate method is also implemented as
		a traditional paste-and-click WWW server at:

		    http://www.cbs.dtu.dk/services/NetGlycate/

		The traditional server offers more detailed output (graphics), extended
		functionality  and comprehensive documentation. It is suitable for close
		investigation of few proteins; this service is recommended for high
		throughput projects.


		WEB SERVICE OPERATION

		This Web Service is fully asynchronous; the usage is split into the
		following three operations:

		1. runService    

		   Input:  An object of the type 'sequencedata' (see the complete definition
		           in http://www.cbs.dtu.dk/ws/common/ws_common_1_0b.xsd) holding
		           protein sequences with mandatory unique identifiers. Each
		           'sequence' is a pair of 'id' (identifier) and 'seq' (sequence
		           itself). The sequences must be written in one letter amino acid
		           code: `acdefghiklmnpqrstvwy' or `ACDEFGHIKLMNPQRSTVWY'. Other
		           letters will be converted to `X' and treated as unknown amino
		           acids. Other symbols, such as whitespace and numbers, will be
		           ignored. 

		   Output: Unique job identifier

		2. pollQueue

		   Input:  Unique job identifier

		   Output: 'jobstatus' - the status of the job
		           Possible values are QUEUED, ACTIVE, FINISHED, WAITING,
		           REJECTED, UNKNOWN JOBID or QUEUE DOWN

		3. fetchResult

		   Input:  Unique job identifier of a FINISHED job

		   Output: An object of the type 'anndata' (see the complete definition
		           in http://www.cbs.dtu.dk/ws/common/ws_common_1_0b.xsd) holding
		           the predition results. 'annsource' states the 'method' (in
		           this case always 'netglycate') and 'version' (in this case
		           always 1.0). The objects of the type 'annrecord' hold the
		           predictions for a given residue in a given sequence, the
		           fields are:

		           feature       - always 'glycate';
		           pos           - sequence residue;
		           score         - prediction score, if above 0 the residue
		                           is a predicted glycation site, the higher
		                           the score the more secure the prediction;
		           comment       - appears only when the score is above 0,
		                           contains the word 'YES'.


		CONTACT

		Questions concerning the scientific aspects of the NetGlycate method
		should go to Morten Bo Johansen, mbj@cbs.dtu.dk; technical questions
		concerning the Web Service should go to Peter Fischer Hallin,
		pfh@cbs.dtu.dk or Kristoffer Rapacki, rapacki@cbs.dtu.dk.
by The EMBRACE Registry (over 11 years ago)

NetGlycate predicts glycation of Epsilon amino groups of lysines in mammalian proteins. The method is described in detail in the following article:

  Analysis and prediction of mammalian protein glycation.
  Morten Bo Johansen, Lars Kiemer and So
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