Pdb SOAP

Cog_error Archived / Deprecated

This service has been archived because it may not be active anymore (or is close to being non active). Please do not use it as it may not be accessible.

aka Pdb fix Add_annotation_inactive

Categories:

Protein Pairwise Alignment

Overview

Provider:
Stockholm Bioinformatics Center, Stockholm University

Location:
Stockholm, Sweden

Submitter/Source:
The EMBRACE Registry (over 11 years ago)

Base URL:
http://wsdl.sbc.su.se/cgi-bin/pdb.cgi

WSDL Location:
http://fw.sbc.su.se/wsdl/pdb.wsdl (download last cached WSDL file)

Documentation URL(s):

None

Description(s):

from

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provider's description doc (over 11 years ago)

The ProteinALIGNment (Pdb) programs are a set of programs for sequence searches. They can perform standard dynamic programming, heuristic fasta like searches and profile-profile alignments. Unfortunately the package is not very well documented, but is all available for free under a GPL like license. Pdb can be used for many type of alignment problems, it is certainly not always the fastest of all programs but it is very flexible. This webservice can 1. Align two sequences with default values 2) Align two sequences with nonDefault parameters 3) Align two sequences and include their secondary structure information 4) Align a sequence and a structure and get the alignment and a CA-pdb-file 5) Align a sequence and a profile 6) Align two profiles.

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The EMBRACE Registry (over 11 years ago)

This service is an interface to a BioPerl::Pdb-module that, given a file with correct numbering, such as a native structure, and another file, such as a homolgy model, changes the numbering of the second Pdb-file to be the same as the first. This is very

ELIXIR Description(s): Info