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Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
European Molecular Biology Network (EMBnet)
Submitter / Source:
smoretti (about 1 year ago)
http://wsembnet.vital-it.ch/soaplab2/services/embnet.blastx?wsdl(download last cached WSDL file)
Documentation URL(s): smoretti (9 months ago)http://ch.embnet.org/software/aBLAST.html
Login to add a documentation URL Description(s): smoretti (9 months ago)BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …
INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output
Login to add a description Details (from Soaplab server): Not available License(s): None Login to add license info Cost: No info yet Login to add cost info Usage Conditions: No info yet Login to add usage conditions info Contact Info: None Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. None Login to add publication info Citations: None Login to add a citation