Web Service PSI-BLAST (SOAP) SOAP Gb

Specified Name (from WSDL): JDispatcherService |
PASSED
Annotations: 34 Total number of annotations from the provider's definition / description document. 12 Total number of annotations submitted by members of BioCatalogue. 22 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom Gb

Submitter/Source:
Hamish McWilliamGb (over 9 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/psiblast

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/psiblast?wsdl (download last cached WSDL file)

Description(s):
by EMBL-EBI Support (almost 7 years ago)

Position Specific Iterative BLAST (PSI-BLAST) refers to a feature of NCBI BLAST 2.0 in which a position-specific scoring matrix (PSSM) profile is constructed from set of BLAST alignments. The PSSM is then used to search the database in subsequent iterations allowing the detection of distant evolutionary relationships. This can be combined with the Pattern Hit Initiated BLAST (PHI-BLAST) mode to constrain the PSSM using a ProSite pattern to define the region(s) to be used when building the PSSM.

ELIXIR Description(s): Info
by Michael Cornell Curator(over 4 years ago)

Position Specific Iterative BLAST (PSI-BLAST) refers to a feature of NCBI BLAST 2.0 in which a position-specific scoring matrix (PSSM) profile is constructed from set of BLAST alignments.

License(s): Info
by EMBL-EBI Support (almost 7 years ago)
Cost: Info
by EMBL-EBI Support (almost 7 years ago)

Free.

Usage conditions: Info
by EMBL-EBI Support (almost 7 years ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Contact info: Info
by EMBL-EBI Support (almost 7 years ago)
by Michael Cornell Curator(over 4 years ago)
How to cite this service: Info
No info yet
Publications about this service: Info
by EMBL-EBI Support (almost 7 years ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010) “A new bioinformatics analysis tools framework at EMBL-EBI.” Nucleic Acids Res. 38:W695-9 PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED) DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

by EMBL-EBI Support (almost 7 years ago)

Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W. and Lipman D.J. (1997) “Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.” Nucleic Acids Res. 25(17):3389-402. PMID: 9254694 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=9254694&dataSource=MED) DOI: 10.1093/nar/25.17.3389 (http://dx.doi.org/10.1093/nar/25.17.3389)

Citations of this service: Info
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