Provider:
European Bioinformatics Institute (EBI)
Location:
United Kingdom
Submitter / Source:
Hamish McWilliam (8 months ago)
Base URL:
http://www.ebi.ac.uk/Tools/services/soap/psisearch
WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/psisearch?wsdl(download last cached WSDL file)
Documentation URL(s): Hamish McWilliam (8 months ago)http://www.ebi.ac.uk/Tools/webservices/services/sss/psisearch_soap
Login to add a documentation URL Description(s): Hamish McWilliam (8 months ago)Similar to PSI-BLAST, PSI-Search uses SSEARCH to perform a rigorous Smith & Waterman search of a protein database. From the results, the significant hits are used to create a position-specific scoring matrix (PSSM) profile using NCBI blastpgp. The profile is then used to perform the search in subsequent iterations allowing the detection of distant evolutionary relationships.
Login to add a description License(s): Hamish McWilliam (about 1 month ago)EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html
Login to add license info Cost: Hamish McWilliam (about 1 month ago)Free.
Login to add cost info Usage Conditions: Hamish McWilliam (about 1 month ago)E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html.
Login to add usage conditions info Contact Info: Hamish McWilliam (about 1 month ago)EMBL-EBI Support: http://www.ebi.ac.uk/support/index.php?query=WebServices
Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. Rodrigo Lopez (5 months ago)http://dx.doi.org/10.1093/nar/gkn785
Hamish McWilliam (about 1 month ago)Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
“A new bioinformatics analysis tools framework at EMBL-EBI.”
Nucleic Acids Res. 38:W695-9
PMID: 20439314 <http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource;=MED>
DOI: 10.1093/nar/gkq313 <http://dx.doi.org/10.1093/nar/gkq313>
Login to add publication info Citations: None Login to add a citation