EMBOSS fcontml SOAP Soaplab

This looks like a Soaplab service. Click here for more info and guidance on how to use this service )

About Soaplab

Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.

Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.

Further documentation on Soaplab services is available:

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom

Submitter/Source:
SoapLab Support (over 11 years ago)

Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/phylogeny_gene_frequencies.fcontml

WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/phylogeny_gene_frequencies.fcontml?wsdl(download last cached WSDL file)

Documentation URL(s): SoapLab Support (over 10 years ago) http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/fcontml.html Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Gene frequency and continuous character Maximum Likelihood

SoapLab Support(over 10 years ago)

Gene frequency and continuous character Maximum Likelihood

Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)

  • ds_lsr_analysis :
    • analysis :
      • name : fcontml
      • installation : Soaplab2 default installation
      • type : Phylogeny Gene frequencies
      • output :
      • description : Gene frequency and continuous character Maximum Likelihood
      • version : 6.1.0
      • analysis_extension :
      • input :

Show all

  • ds_lsr_analysis :
    • analysis :
      • name : fcontml
      • installation : Soaplab2 default installation
      • type : Phylogeny Gene frequencies
      • output :
      • description : Gene frequency and continuous character Maximum Likelihood
      • version : 6.1.0
      • analysis_extension :
        • option :
          • name : emboss
          • type : normal
          • value : true
          • name : installation
          • type : normal
          • value : Soaplab2 default installation
          • name : version
          • type : normal
          • value : 6.1.0
        • event :
          • action :
          • id : _E_1
        • app_info :
          • category : phylogeny_gene_frequencies
          • help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/fcontml.html
        • parameter :
          • data :
            • ioformat : unspecified
            • iotype : input
            • repeatable :
          • base :
          • data :
            • ioformat : unspecified
            • iotype : input
            • repeatable :
          • base :
          • data :
            • result :
            • iotype : output
          • base :
          • standard :
            • list :
              • name : Input type
              • list_item :
                • level : 0
                • shown_as : Gene frequencies
                • value : g
                • level : 0
                • shown_as : Continuous characters
                • value : i
              • type : full
            • repeatable :
          • base :
          • base :
            • name : lengths
            • default : false
            • mandatory : false
            • qualifier : lengths
            • prompt : Use branch lengths from user trees
            • type : boolean
            • ordering : 6
          • range :
            • format : %d
            • min : 0
            • repeatable :
          • base :
            • name : njumble
            • default : 0
            • mandatory : false
            • qualifier : njumble
            • prompt : Number of times to randomise
            • type : long
            • ordering : 7
          • range :
            • format : %d
            • max : 32767
            • min : 1
            • repeatable :
          • base :
            • name : seed
            • default : 1
            • option :
              • name : scalemax
              • type : style
              • value : 32767
              • name : scalemin
              • type : style
              • value : 1
            • mandatory : false
            • qualifier : seed
            • prompt : Random number seed between 1 and 32767 (must be odd)
            • type : long
            • ordering : 8
          • base :
            • name : global
            • default : false
            • mandatory : false
            • qualifier : global
            • prompt : Global rearrangements
            • type : boolean
            • ordering : 9
          • range :
            • format : %d
            • max :
            • min : 0
            • repeatable :
          • base :
            • name : outgrno
            • default : 0
            • option :
              • name : calculated_hardmax
              • type : normal
              • value : ${infile.freqsize}
            • mandatory : false
            • qualifier : outgrno
            • prompt : Species number to use as outgroup
            • type : long
            • ordering : 10
          • base :
            • name : trout
            • default : false
            • mandatory : false
            • qualifier : trout
            • prompt : Write out trees to tree file
            • type : boolean
            • ordering : 14
          • data :
            • result :
            • extension : treefile
            • iotype : output
          • base :
          • base :
            • name : printdata
            • default : false
            • mandatory : false
            • qualifier : printdata
            • prompt : Print data at start of run
            • type : boolean
            • ordering : 16
          • base :
            • name : progress
            • default : false
            • mandatory : false
            • qualifier : progress
            • prompt : Print indications of progress of run
            • type : boolean
            • ordering : 17
          • base :
            • name : treeprint
            • default : false
            • mandatory : false
            • qualifier : treeprint
            • prompt : Print out tree
            • type : boolean
            • ordering : 18
      • input :
        • name : lengths
        • default : false
        • mandatory : false
        • type : boolean
        • name : njumble
        • default : 0
        • mandatory : false
        • type : long
        • name : seed
        • default : 1
        • mandatory : false
        • type : long
        • name : global
        • default : false
        • mandatory : false
        • type : boolean
        • name : outgrno
        • default : 0
        • mandatory : false
        • type : long
        • name : trout
        • default : false
        • mandatory : false
        • type : boolean
        • name : printdata
        • default : false
        • mandatory : false
        • type : boolean
        • name : progress
        • default : false
        • mandatory : false
        • type : boolean
        • name : treeprint
        • default : false
        • mandatory : false
        • type : boolean

License(s): No info yet Login to add license info Cost: No info yet Login to add cost info Usage conditions: No info yet Login to add usage conditions info Contact info: No info yet Login to add contact info How to cite this service: No info yet Login to add how to cite info Publications about this service: for this service (this can be in a common citation format like Bibtex, MLA or APA, a DOI, a URL, etc.) No info yet Login to add publications info Citations of this service: No info yet Login to add citations info Example workflows using this service: See all workflows on myExperiment that use this service Login to add workflows info