European Bioinformatics Institute (EBI)
Submitter / Source:
Hamish McWilliam (2 months ago)
Documentation URL(s): Hamish McWilliam (2 months ago)http://www.ebi.ac.uk/Tools/webservices/services/sss/fastm_rest
Login to add a documentation URL Description(s): Hamish McWilliam (2 months ago)The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching protein databases with a set of short peptides, as may be obtained from mass spec. or Edman sequencing:
* FASTF – Compares an ordered peptide mixture, as would be obtained by Edman degradation of a CNBr cleavage of a protein, against a protein database.
* FASTM – Compares an ordered set of peptides to a protein sequence database.
* FASTS – Compares a set of short peptide fragments, as would be obtained from mass-spec. analysis of a protein, against a protein database.
Login to add license info Cost: Hamish McWilliam (2 months ago)Free.
Login to add usage conditions info Contact Info: Hamish McWilliam (2 months ago)EMBL-EBI Support: http://www.ebi.ac.uk/support/index.php?query=WebServices
Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. Hamish McWilliam (2 months ago)Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
“A new bioinformatics analysis tools framework at EMBL-EBI.”
Nucleic Acids Res. 38:W695-9
PMID: 20439314 <http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource;=MED>
DOI: 10.1093/nar/gkq313 <http://dx.doi.org/10.1093/nar/gkq313>
Hamish McWilliam (2 months ago)Mackey A.J., Haystead T.A. and Pearson W.R. (2002)
“Getting more from less: algorithms for rapid protein identification with multiple short peptide sequences.”
Mol. Cell Proteomics 1(2):139-47.
PMID: 12096132 <http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=12096132&dataSource;=MED>
DOI: 10.1074/mcp.M100004-MCP200 <http://dx.doi.org/10.1074/mcp.M100004-MCP200>