Web Service MutalyzerService SOAP

aka Mutalyzer Position Converter aka Mutalyzer SNP Converter aka Mutalyzer Syntax Checker aka Mutalyzer Name Checker Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
PASSED
Annotations: 153 Total number of annotations from the provider's definition / description document. 135 Total number of annotations submitted by members of BioCatalogue. 18 Total number of annotations sourced from other registries. 0

SOAP Operations (27)

These are the SOAP operations available for the SOAP variant of this service. Click on each one to get more information and to annotate.

checkSyntax

1 input | 1 output

Part of Service: MutalyzerService

Checks the syntax of a variant. @arg variant: The variant to check. @type variant: string @return: Object with f...
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chromAccession

1 input | 1 output

Part of Service: MutalyzerService

Get the accession number of a chromosome, given a name. @arg build: The genome build (hg19, hg18, mm10). @type build: str...
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chromosomeName

1 input | 1 output

Part of Service: MutalyzerService

Get the name of a chromosome, given a chromosome accession number. @arg build: The genome build (hg19, hg18, mm10). @type...
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descriptionExtract

1 input | 1 output

Part of Service: MutalyzerService

Extract the HGVS variant description from a reference sequence and an observed sequence. Note that this only works on DNA...
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getBatchJob

1 input | 1 output

Part of Service: MutalyzerService

Get the result of a batch job. Input and output file formats for batch jobs are explained on the website <https://mutalyz...
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getCache

1 input | 1 output

Part of Service: MutalyzerService

Get a list of entries from the local cache created since given date. This method is intended to be used by Mutalyzer itself to sy...
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getchromName

1 input | 1 output

Part of Service: MutalyzerService

Get the chromosome name, given a transcript identifier (NM number). @arg build: The genome build (hg19, hg18, mm10). @typ...
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getdbSNPDescriptions

1 input | 1 output

Part of Service: MutalyzerService

Lookup HGVS descriptions for a dbSNP rs identifier. @arg rs_id: The dbSNP rs identifier, e.g. 'rs9919552'. @type rs_id: s...
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getGeneAndTranscript

1 input | 1 output

Part of Service: MutalyzerService

Todo: documentation.
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getGeneName

1 input | 1 output

Part of Service: MutalyzerService

Find the gene name associated with a transcript. @arg build: The genome build (hg19, hg18, mm10). @type build: string ...
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getTranscripts

1 input | 1 output

Part of Service: MutalyzerService

Get all the transcripts that overlap with a chromosomal position. On error an exception is raised: - detail ; Hum...
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getTranscriptsAndInfo

1 input | 1 output

Part of Service: MutalyzerService

Given a genomic reference, return all its transcripts with their transcription/cds start/end sites and exons. @arg genomi...
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getTranscriptsByGeneName

1 input | 1 output

Part of Service: MutalyzerService

Todo: documentation.
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getTranscriptsMapping

1 input | 1 output

Part of Service: MutalyzerService

Get all the transcripts and their info that overlap with a range on a chromosome. @arg build: The genome build (hg19, hg1...
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getTranscriptsRange

1 input | 1 output

Part of Service: MutalyzerService

Get all the transcripts that overlap with a range on a chromosome. @arg build: The genome build (hg19, hg18, mm10). @type...
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info

1 input | 1 output

Part of Service: MutalyzerService

Gives some static application information, such as the current running version. @return: Object with fields: ...
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mappingInfo

1 input | 1 output

Part of Service: MutalyzerService

Search for an NM number in the MySQL database, if the version number matches, get the start and end positions in a variant and ...
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monitorBatchJob

1 input | 1 output

Part of Service: MutalyzerService

Get the number of entries left for a batch job. Input and output file formats for batch jobs are explained on the website...
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numberConversion

1 input | 1 output

Part of Service: MutalyzerService

Converts I{c.} to I{g.} notation or vice versa @arg build: The genome build (hg19, hg18, mm10). @type build: string ...
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ping

1 input | 1 output

Part of Service: MutalyzerService

Simple function to test the interface. @return: Always the value 'pong'. @rtype: string
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runMutalyzer

1 input | 1 output

Part of Service: MutalyzerService

Run the Mutalyzer name checker. @arg variant: The variant description to check. @type variant: string @return: O...
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sliceChromosome

1 input | 1 output

Part of Service: MutalyzerService

Todo: documentation, error handling, argument checking, tests. @arg orientation: Orientation of the slice. 1 for forward, 2 for ...
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sliceChromosomeByGene

1 input | 1 output

Part of Service: MutalyzerService

Todo: documentation, error handling, argument checking, tests.
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submitBatchJob

1 input | 1 output

Part of Service: MutalyzerService

Submit a batch job. Input and output file formats for batch jobs are explained on the website <https://mutalyzer.nl/batch...
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transcriptInfo

1 input | 1 output

Part of Service: MutalyzerService

Search for an NM number in the MySQL database, if the version number matches, the transcription start and end and CDS end ...
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upLoadGenBankLocalFile

1 input | 1 output

Part of Service: MutalyzerService

Not implemented yet.
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upLoadGenBankRemoteFile

1 input | 1 output

Part of Service: MutalyzerService

Not implemented yet.
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Archived Operations (0) Info