Web Service GPMDB REST API REST Ca

aka GPM REST aka GPM-2012.6.11 Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
PASSED
Annotations: 14 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of BioCatalogue. 14 Total number of annotations sourced from other registries. 0

REST Endpoints (23)

Interface help | GET /interface/help

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/interface/help?none={none}

by rbeavis (over 8 years ago)

The method returns a short reference for the methods currently available through the interface, in a JSON array of strings.

Tags on this endpoint:
none

Interface version specification | GET /interface/version

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/interface/version?none={none}

by rbeavis (over 8 years ago)

The response is a JSON array with only one value: a version string.

Tags on this endpoint:
none

Model metadata | GET /model/metadata

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/model/metadata?gpm={gpm}

by rbeavis (over 8 years ago)

The endpoint returns a set of relevant experimental and data analysis parameters used to generate the GPM protein and peptide model of the associated mass spectrometry raw data.

Tags on this endpoint:
none

Model proteins | GET /model/proteins

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/model/proteins?gpm={gpm}

by rbeavis (over 8 years ago)

The endpoint returns a list of the primary accession numbers found in the model generated from the associated mass spectrometry raw data.

Tags on this endpoint:
none

Model protein modifications | GET /model/protein_modifications

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/model/protein_modifications?acc={acc}&gpm={gpm}

by rbeavis (over 8 years ago)

Returns a list of the protein post-translational and experimentally induced chemical modifications found by analyzing the associated mass spectrometry raw data

Tags on this endpoint:
none

Model protein peptides | GET /model/protein_peptides

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/model/protein_peptides?acc={acc}&gpm={gpm}

by rbeavis (over 8 years ago)

Method returns a list of the peptides found for a particular protein accession number in the model generated from the associated mass spectrometry raw data.

Tags on this endpoint:
none

Model protein polymorphisms | GET /model/protein_polymorphisms

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/model/protein_polymorphisms?acc={acc}&gpm={gpm}

by rbeavis (over 8 years ago)

Returns a list of the amino acid polymorphisms found for a specified protein accession number in the model associated with a particular set of mass spectrometry raw data.

Tags on this endpoint:
none

Model protein sequence | GET /model/protein_sequence

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/model/protein_sequence?acc={acc}&gpm={gpm}

by rbeavis (over 8 years ago)

Retrieves the protein sequence associated with a particular accession number used in the analysis of the associated mass spectrometry raw data. The protein sequence is represented in single letter amino acid code.

Tags on this endpoint:
none

Peptide protein accessions | GET /peptide/accessions

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/peptide/accessions?seq={seq}

by rbeavis (over 8 years ago)

Retrieves all of the accession numbers that have been associated with identifications of the specified peptide sequences.

Tags on this endpoint:
none

Peptide count | GET /peptide/count

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/peptide/count?seq={seq}

by rbeavis (over 8 years ago)

Retrieves the total number of observations of a peptide sequence.

Tags on this endpoint:
none

Peptide count by z | GET /peptide/count_z

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/peptide/count_z?seq={seq}

by rbeavis (over 8 years ago)

Retrieves the number of observations of a peptide sequence, as a function of the measured peptide parent ion charge, z.

Tags on this endpoint:
none

Protein best E-value | GET /protein/best_e

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/best_e?acc={acc}

by rbeavis (over 8 years ago)

Retrieves the lowest base-10 log(E) for an identification of the protein associated with the accession number.

Tags on this endpoint:
none

Protein count | GET /protein/count

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/count?acc={acc}

by rbeavis (over 8 years ago)

Retrieves the number of data set in which a particular protein has been identified.

Tags on this endpoint:
none

Protein description | GET /protein/description

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/description?acc={acc}

by rbeavis (over 8 years ago)

Retrieves a text description of the protein associated with the accession number.

Tags on this endpoint:
none

Protein evidence code | GET /protein/evidence

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/evidence?acc={acc}

by rbeavis (over 8 years ago)

Retrieve the GPMDB evidence code for the overall quality of the identifications of the protein associated with the accession number.

Tags on this endpoint:
none

Protein keyword | GET /protein/keyword

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/keyword?key={key}&filter={filter}

by rbeavis (over 8 years ago)

Retrieves all observed protein accession numbers that have the keyword in their text description.

Tags on this endpoint:
none

Protein modifications | GET /protein/modifications

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/modifications?acc={acc}&maxe={maxe}&mod={mod}&res={res}

by rbeavis (over 8 years ago)

Retrieves a list of the modification sites for a protein modification specified by the protein’s accession number, the modification mass, candidate residues types and the maximum allowable log10(E) value for the peptide identifications.

Tags on this endpoint:
none

Protein peptide total | GET /protein/peptides_total

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/peptides_total?acc={acc}

by rbeavis (over 8 years ago)

Retrieve the number of peptide identifications for the protein sequence associated with the accession number.

Tags on this endpoint:
none

Protein peptide count by z | GET /protein/peptides_z

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/peptides_z?acc={acc}

by rbeavis (over 8 years ago)

Retrieve the number of peptide observations for the protein associated with an accession number, by the parent ion change of the associated tandem mass spectrum.

Tags on this endpoint:
none

Protein peptide count | GET /protein/peptide_count

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/peptide_count?acc={acc}&seq={seq}

by rbeavis (over 8 years ago)

Retrieves the number of identifications of a peptide sequence in the protein sequence associated with a particular accession number.

Tags on this endpoint:
none

Protein peptide sequences | GET /protein/peptide_sequences

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/peptide_sequences?acc={acc}

by rbeavis (over 8 years ago)

Retrieves a list of the peptide sequences that have been observed associated with a particular protein accession number.

Tags on this endpoint:
none

Protein amino acid polymorphisms | GET /protein/polymorphisms

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/polymorphisms?acc={acc}

by rbeavis (over 8 years ago)

Retrieves all of the amino acid polymorphisms that have been identified for the protein sequence associated with the accession number.

Tags on this endpoint:
none

Protein sequence | GET /protein/sequence

Part of Service: GPMDB REST API

Part of Endpoint Group: none

Template: Help_icon http://gpmdb.thegpm.org/1/protein/sequence?acc={acc}

by rbeavis (over 8 years ago)

Retrieves the current protein sequence associated with the accession number, in single-letter amino acid code.

Tags on this endpoint:
none

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