Web Service DIANA-labs microRNA server (miRNA server: microT, miRPath, TarBase) REST Ir

aka miRPath miRNA functional analysis on KEGG pathways aka TarBase miRNA-gene interaction database aka Computational Prediction of microRNA (miRNA) Targets with DIANA-microT v4 aka DIANA-microT-ANN Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
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Annotations: 29 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of BioCatalogue. 29 Total number of annotations sourced from other registries. 0

REST Endpoints (4)

microT v4 (ANN) | GET /microtv4Api

Part of Service: DIANA-labs microRNA server (miRNA server: microT, miRPath, TarBase)

Part of Endpoint Group: none

Template: Help_icon http://62.217.127.8/DianaTools/microtv4Api?genes={genes}&mirnas={mirnas}&threshold={threshold}

by DIANA-lab, BSRC "Al. Fleming" (over 5 years ago)

Computational miRNA-gene interaction using the DIANA-microT v4 algorithm (ANN). This service can predict miRNA-gene interactions for selected miRNAs AND/OR selected Genes.

Tags on this endpoint:
none

microT v5 CDS | GET /microT_CDSApi

Part of Service: DIANA-labs microRNA server (miRNA server: microT, miRPath, TarBase)

Part of Endpoint Group: none

Template: Help_icon http://62.217.127.8/DianaTools/microT_CDSApi?genes={genes}&mirnas={mirnas}&threshold={threshold}

by DIANA-lab, BSRC "Al. Fleming" (over 5 years ago)

Computational miRNA-gene interaction using the DIANA-microT v5 algorithm (CDS). This service can predict miRNA-gene interactions for selected miRNAs AND/OR selected Genes.

Tags on this endpoint:
none

miRPath v2 | GET /mirpathApi

Part of Service: DIANA-labs microRNA server (miRNA server: microT, miRPath, TarBase)

Part of Endpoint Group: none

Template: Help_icon http://62.217.127.8/DianaTools/mirpathApi?false_rate={false_rate}&inter_mir={inter_mir}&methods={methods}&mirnas={mirnas}&selection={selection}&species={species}&stats={stats}&threshold={threshold}

by DIANA-lab, BSRC "Al. Fleming" (over 5 years ago)

A REST service for DIANA-miRPath v2.1 microRNA functional analysis. This service queries DIANA-miRPath server and identifies significantly targeted pathways by the selected miRNA(s). The miRNA-gene interactions can be derived directly from TarBase,or can be computationally predicted using DIANA-microT-CDS. The user can enter more than one miRNAs in each query (miRNA names OR MIMAT ids are separated by space characters). DIANA miRPath in this case identifies significantly targeted pathways by the combinatorial effect of the selected miRNAs. The web server can combine multiple miRNAs by: Calculating the Union of Targeted Genes (Gene Union), Gene Intersection, the Union of Targeted Pathways by a meta-analysis algorithm (Pathways Union) and the Intersection of Targeted Pathways by a meta-analysis algorithm (Pathways Intersection). Users can select: attribute [identifier in the REST service] miRNA(s) [mirnas]: using miRNA name (miRBase 18+ nomenclature) OR MIMAT IDs miRNA-gene interaction identification method [methods]: Tarbase OR microT-CDS species [species]: human, mouse… method for multiple miRNA result combination [selection]: 0 (genes union), 1 (genes intersection), 2 (pathways union), 3 (pathways intersection) Soft intersection (gene intersections can be counted as a valid when a gene is targeted by miRNAs>= than the selected cut-off. Works only in the case of selection=1 / genes intersection) [inter_mir]: from 0 up to number of provided miRNAs (hard intersection) microT prediction threshold [threshold]: ranges from 0.3 (minimum), up to 1 (maximum) False Discovery Rate significance level [false_rate]: ranges from 0 to 1 Use Conservative Statistics [stats]: true / false

Tags on this endpoint:
none

TarBase v6.0 | GET /tarbaseApi

Part of Service: DIANA-labs microRNA server (miRNA server: microT, miRPath, TarBase)

Part of Endpoint Group: none

Template: Help_icon http://62.217.127.8/DianaTools/tarbaseApi?genes={genes}&mirnas={mirnas}

by DIANA-lab, BSRC "Al. Fleming" (over 5 years ago)

This is a REST service to query directly DIANA-TarBase v6.0 the largest available database indexing manually curated experimentaly validated miRNA-gene interactions. The user can query using a gene name / ENSEMBL gene ID (preferred) OR miRNA name (miRBase 18+ nomenclature) / MIMAT ID. Only one miRNA OR gene can be queried at a time.

Tags on this endpoint:
none

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