Web Service EMBOSS cpgplot (SOAP) SOAP Gb

Specified Name (from WSDL): JDispatcherService |
aka EMBOSS cpgplot Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
PASSED
Annotations: 31 Total number of annotations from the provider's definition / description document. 12 Total number of annotations submitted by members of BioCatalogue. 19 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom Gb

Submitter/Source:
Michael CornellGbCurator (over 6 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/emboss_cpgplot

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/emboss_cpgplot?wsdl (download last cached WSDL file)

Description(s):
by Michael Cornell Curator(over 6 years ago)

cpgplot identifies CpG islands in one or more nucleotide sequences. The ratio of observed to expected number of GC dinucleotides patterns is calculated over a window (sequence region) which is moved along the sequence. The calculated ratios are plotted graphically, together with the regions which match this program’s definition of a “CpG island” (a CG dinucleotide rich area). A report file is written giving the input sequence name, CpG island parameters and data on any CpG islands that are found.

ELIXIR Description(s): Info
by Michael Cornell Curator(over 5 years ago)

cpgplot identifies CpG islands in one or more nucleotide sequences. The ratio of observed to expected number of GC dinucleotides patterns is calculated over a window (sequence region) which is moved along the sequence. The calculated ratios are plotted graphically, together with the regions which match this program’s definition of a “CpG island” (a CG dinucleotide rich area). A report file is written giving the input sequence name, CpG island parameters and data on any CpG islands that are found.

License(s): Info
by EMBL-EBI Support (over 6 years ago)

This service does not require a license but should be used according to EMBL-EBI’s policies http://www.ebi.ac.uk/about/terms-of-use

Cost: Info
by EMBL-EBI Support (over 6 years ago)

Free.

Usage conditions: Info
by EMBL-EBI Support (over 6 years ago)

E-mail supplied for submission must be a valid e-mail address and no more than 30 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/ and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/about/terms-of-use

Contact info: Info
by EMBL-EBI Support (over 6 years ago)
by Michael Cornell Curator(over 5 years ago)
How to cite this service: Info
No info yet
Publications about this service: Info
by EMBL-EBI Support (over 6 years ago)

Rice P., Longden I. and Bleasby A. (2000) “EMBOSS: the European Molecular Biology Open Software Suite” Trends in Genetics 16(6):276-277 PMID: 10827456 (http://europepmc.org/abstract/MED/10827456) DOI: 10.1016/S0168-9525(00)02024-2

by EMBL-EBI Support (over 6 years ago)

McWilliam H., Li W., Uludag M., Squizzato S., Park Y.M., Buso N., Cowley A.P. and Lopez R. (2013) “Analysis Tool Web Services from the EMBL-EBI” Nucleic Acids Res. 41(Web Server issue):W597-600 PMID: 23671338 (http://europepmc.org/abstract/MED/23671338) DOI: 10.1093/nar/gkt376

by EMBL-EBI Support (over 6 years ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R (2010) “A new bioinformatics analysis tools framework at EMBL-EBI” Nucleic Acids Res. 38(Web Server issue):W695-9 PMID: 20439314 (http://europepmc.org/abstract/MED/20439314) DOI: 10.1093/nar/gkq313

Citations of this service: Info
No info yet

Info Members Responsible for this Service (2)

Info Favourited By (0)

No one

Info Similar Services (100)