Web Service cpdb SOAP

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Annotations: 26 Total number of annotations from the provider's definition / description document. 16 Total number of annotations submitted by members of BioCatalogue. 10 Total number of annotations sourced from other registries. 0

SOAP Operations (8)

These are the SOAP operations available for the SOAP variant of this service. Click on each one to get more information and to annotate.
Quick Browse | enrichmentAnalysis | getAvailableAccessionTypes | getAvailableFsetTypes | getCpdbIdsInFset | getCpdbVersion | getDefaultBackgroundSize | mapAccessionNumbers | overRepresentationAnalysis |

enrichmentAnalysis

1 input | 1 output

Part of Service: cpdb

Performs Wilcoxon enrichment analysis of functional sets with provided physical entities. Parameter 'entityType' should be either 'genes' or 'meta...
Tags on this SOAP Operation:
none

getAvailableAccessionTypes

1 input | 1 output

Part of Service: cpdb

Provides a list of different types of accession numbers (e.g. 'uniprot') that are mappable to CPDB entity IDs. Parameter 'entityType' should be ei...
Tags on this SOAP Operation:
none

getAvailableFsetTypes

1 input | 1 output

Part of Service: cpdb

Provides a list of available functional set types such as pathways, GO categories, NESTs, ... Parameter 'entityType' should be either 'genes' or '...
Tags on this SOAP Operation:
none

getCpdbIdsInFset

1 input | 1 output

Part of Service: cpdb

Returns all CPDB entity IDs in a functional set. Note that functional sets of type 'N' (NESTs) are protected and cannot be retrieved. Parameter 'f...
Tags on this SOAP Operation:
none

getCpdbVersion

1 input | 1 output

Part of Service: cpdb

Provides the version of ConsensusPathDB which is the source for functional sets.
Tags on this SOAP Operation:
none

getDefaultBackgroundSize

1 input | 1 output

Part of Service: cpdb

Provides the default background size for over-representation analysis. Note that it is accession number-specific.
Tags on this SOAP Operation:
none

mapAccessionNumbers

1 input | 1 output

Part of Service: cpdb

Maps accession numbers of a valid type to CPDB entity IDs. Parameter 'accType' is a valid accession number type (such as 'uniprot'). Parameter 'ac...
Tags on this SOAP Operation:
none

overRepresentationAnalysis

1 input | 1 output

Part of Service: cpdb

Performs over-representation analysis of functional sets with provided physical entities. Parameter 'entityType' should be either 'genes' or 'meta...
Tags on this SOAP Operation:
none

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Archived Operations (0) Info