Web Service OMA SOAP Ch

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Annotations: 61 Total number of annotations from the provider's definition / description document. 54 Total number of annotations submitted by members of BioCatalogue. 7 Total number of annotations sourced from other registries. 0

SOAP Operations (11)

These are the SOAP operations available for the SOAP variant of this service. Click on each one to get more information and to annotate.

GetEntry

1 input | 6 outputs

Part of Service: OMA

Given an OMA entry identifier or another ID, this functions lists all possible IDs and cross-references for this entry that were found in the ...
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GetMatrixInfo

0 inputs | 3 outputs

Part of Service: OMA

This function returns the name of the current data set as well as the number of species and OMA groups in this data set.
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GetOMAGroup

1 input | 1 output

Part of Service: OMA

For any OMA group, this function returns a list IDs of all member proteins.
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IdentifySequence

1 input | 1 output

Part of Service: OMA

This function provides an easy way to map any sequence to the OMA entries by searching the input protein sequence in the OMA database. A list of a...
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ListIDTypes

0 inputs | 1 output

Part of Service: OMA

Get the list of ID types, which is of the form [[0,"OMA ID"], [1,"SwissProt ID"], ...].
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ListOrthologs

1 input | 1 output

Part of Service: OMA

Lists all orthologs for a given entry. To learn more about the exact relationship to the returned entries, use the TestOrthology function. To get ...
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ListOrthologsBetweenGenomePair

4 inputs | 1 output

Part of Service: OMA

Get the list of orthologs between two genomes. The result consists of the pair of IDs (according to requested type), the type of orthology (1:1 or...
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ListOrthologsInGenome

3 inputs | 1 output

Part of Service: OMA

Get for a list of genes all its orthologs in a given target genomes. The query genes do not need to belong to the same species. The result consis...
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ListSpecies

0 inputs | 1 output

Part of Service: OMA

Get the list of species covered by OMA in the form of [SpeciesCodes, TaxonId], defined by UniProt and NCBI respectively. [["HUMAN",9606],...]. Th...
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MapIDs

2 inputs | 1 output

Part of Service: OMA

Map a list of IDs (of any type) to a IDs of a specified type. Use the ListIDType command to obtain a list of possible ID types
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TestOrthology

2 inputs | 1 output

Part of Service: OMA

Test the orthology relationship between two entries. Possible answers are 'not orthologous', '1:1 orthologs', '1:many orthologs' or 'many:1 ortho...
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Archived Operations (0) Info