FetchProDomService SOAP

Provider:
The Protein Domain Database (ProDom)

Location:
France

Submitter / Source:
prohelp (over 2 years ago)

Base URL:
http://prodom.prabi.fr/prodom/2006.1/cgi-bin/fetchProDom.cgi

WSDL Location:
http://prodom.prabi.fr/prodom/current/wsdl/fetchProDom.wsdl(download last cached WSDL file)

Documentation URL(s): ProDom team (about 1 year ago)http://prodom.prabi.fr/prodom/current/documentation/fetchProDom.html

Login to add a documentation URL Description(s): Franck Tanoh (over 2 years ago)Retrieve information from the ProDom database .

The EMBRACE Registry (about 1 year ago)fetchProDom is a set of five different webservices that interrogates the ProDom database.

 

    • fetchdom: Enter one or several (separated by spaces) ProDom AC (eg PD000039) and it returns the family(ies) description in prodom format.

 

    • fetchdom_fasta: same as above with the results given in fasta format.

 

    • fetchdom_align: from one ProDom AC gives two output: one is the alignment of the proteins of the ProDom family and the other is the consensus sequence. This particular webservice is made to work with blastProDom.

 

    • fetchdom_keyword: Enter one or several keyword(s)(separated by a blank space) and a “boolean”: and/or and it returns the ProDom familiy(ies) which have the keyword(s) in the description field in prodom format and a file with only their AC.

 

    • fetchProt: Enter one Protein AC (SWISS-Prot or TREmbl) and it returns the domain composition of this protein.

 

Please see ProDom help page and data file format help page if needed.
We have a perl script available to run this webservice from your computer. Please install SOAP Lite before.

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